Information for 10-CAACAGTGGC (Motif 25)

G T A C G T C A C T G A G T A C C G T A A C T G G A C T C T A G T A C G G T A C
Reverse Opposite:
A C T G A T G C A G T C C G T A A G T C A C G T A C T G A G C T A C G T A C T G
p-value:1e-7
log p-value:-1.830e+01
Information Content per bp:1.838
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.36%
Number of Background Sequences with motif163.2
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets59.9 +/- 24.6bp
Average Position of motif in Background50.2 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0050.1_Osr1_1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CAACAGTGGC----
ATTTACAGTAGCAAAA
 A C G T A C G T G T A C G T C A C T G A G T A C C G T A A C T G G A C T C T A G T A C G G T A C A C G T A C G T A C G T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

PB0051.1_Osr2_1/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CAACAGTGGC----
ATGTACAGTAGCAAAG
 A C G T A C G T G T A C G T C A C T G A G T A C C G T A A C T G G A C T C T A G T A C G G T A C A C G T A C G T A C G T A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CAACAGTGGC
-AACAAAGG-
 G T A C G T C A C T G A G T A C C G T A A C T G G A C T C T A G T A C G G T A C
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CAACAGTGGC
GAACAATGGN
 G T A C G T C A C T G A G T A C C G T A A C T G G A C T C T A G T A C G G T A C
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

SCRT2/MA0744.1/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CAACAGTGGC
ATGCAACAGGTGG
 A C G T A C G T A C G T G T A C G T C A C T G A G T A C C G T A A C T G G A C T C T A G T A C G G T A C
T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CAACAGTGGC
VRAACAATGG-
 A C G T G T A C G T C A C T G A G T A C C G T A A C T G G A C T C T A G T A C G G T A C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T

SCRT1/MA0743.1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CAACAGTGGC--
GAGCAACAGGTGGTT
 A C G T A C G T A C G T G T A C G T C A C T G A G T A C C G T A A C T G G A C T C T A G T A C G G T A C A C G T A C G T
T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T

SOX9/MA0077.1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CAACAGTGGC
GAACAATGG-
 G T A C G T C A C T G A G T A C C G T A A C T G G A C T C T A G T A C G G T A C
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CAACAGTGGC
-CACAGN---
 G T A C G T C A C T G A G T A C C G T A A C T G G A C T C T A G T A C G G T A C
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CAACAGTGGC
RAACAATGGN
 G T A C G T C A C T G A G T A C C G T A A C T G G A C T C T A G T A C G G T A C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C