Information for 4-GGAGWCAAGGTTGGCA (Motif 12)

T C A G A C T G G C T A T C A G C G A T T A G C C G T A T G C A C T A G A T C G C G A T A C G T A T C G A T C G G T A C C G T A
Reverse Opposite:
C G A T A C T G A T G C A T G C T G C A C G T A A T G C A G T C A C G T A C G T A T C G G C T A A G T C C A G T A G T C A G T C
p-value:1e-10
log p-value:-2.457e+01
Information Content per bp:1.700
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets65.2 +/- 22.4bp
Average Position of motif in Background27.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GGAGWCAAGGTTGGCA----
----NGTAGGTTGGCATNNN
 T C A G A C T G G C T A T C A G C G A T T A G C C G T A T G C A C T A G A T C G C G A T A C G T A T C G A T C G G T A C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.64
Offset:8
Orientation:reverse strand
Alignment:GGAGWCAAGGTTGGCA-
--------GGTTGGCAT
 T C A G A C T G G C T A T C A G C G A T T A G C C G T A T G C A C T A G A T C G C G A T A C G T A T C G A T C G G T A C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GGAGWCAAGGTTGGCA--
GGAAGGAAGGAAGGAAGG
 T C A G A C T G G C T A T C A G C G A T T A G C C G T A T G C A C T A G A T C G C G A T A C G T A T C G A T C G G T A C C G T A A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

HIC2/MA0738.1/Jaspar

Match Rank:4
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:GGAGWCAAGGTTGGCA-
--------NGTGGGCAT
 T C A G A C T G G C T A T C A G C G A T T A G C C G T A T G C A C T A G A T C G C G A T A C G T A T C G A T C G G T A C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.55
Offset:9
Orientation:reverse strand
Alignment:GGAGWCAAGGTTGGCA--
---------NTTGGCANN
 T C A G A C T G G C T A T C A G C G A T T A G C C G T A T G C A C T A G A T C G C G A T A C G T A T C G A T C G G T A C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.54
Offset:8
Orientation:reverse strand
Alignment:GGAGWCAAGGTTGGCA--
--------NNTTGGCANN
 T C A G A C T G G C T A T C A G C G A T T A G C C G T A T G C A C T A G A T C G C G A T A C G T A T C G A T C G G T A C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.54
Offset:-9
Orientation:reverse strand
Alignment:---------GGAGWCAAGGTTGGCA
RGGCAMTAGGGAGCCATRGAAGGTK
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A C T G G C T A T C A G C G A T T A G C C G T A T G C A C T A G A T C G C G A T A C G T A T C G A T C G G T A C C G T A
C T A G C T A G C T A G A G T C T C G A T G C A G A C T C T G A A C T G A C T G A C T G C G T A A C T G A G T C G A T C C G T A A G C T C T A G A T C G G T C A C T G A C T A G T C A G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.54
Offset:10
Orientation:forward strand
Alignment:GGAGWCAAGGTTGGCA
----------TTGGCA
 T C A G A C T G G C T A T C A G C G A T T A G C C G T A T G C A C T A G A T C G C G A T A C G T A T C G A T C G G T A C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.52
Offset:9
Orientation:reverse strand
Alignment:GGAGWCAAGGTTGGCA-
---------CTTGGCAA
 T C A G A C T G G C T A T C A G C G A T T A G C C G T A T G C A C T A G A T C G C G A T A C G T A T C G A T C G G T A C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GGAGWCAAGGTTGGCA--
--NGTCACGCTTGGCTGC
 T C A G A C T G G C T A T C A G C G A T T A G C C G T A T G C A C T A G A T C G C G A T A C G T A T C G A T C G G T A C C G T A A C G T A C G T
A C G T A C G T C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C