Information for 2-CTGCCATGTTGGTGCT (Motif 5)

A G T C A G C T A C T G A G T C T G A C C T G A A C G T A C T G G C A T C G A T A T C G A C T G A G C T C A T G G T A C G A C T
Reverse Opposite:
C T G A A C T G G A T C C T G A T G A C A T G C G C T A C G T A G T A C C G T A G A C T A C T G C T A G G T A C C T G A C T A G
p-value:1e-14
log p-value:-3.371e+01
Information Content per bp:1.720
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.2 +/- 24.2bp
Average Position of motif in Background54.3 +/- 10.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCATGTTGGTGCT
GCCGCCATCTTG-----
 A C G T A G T C A G C T A C T G A G T C T G A C C T G A A C G T A C T G G C A T C G A T A T C G A C T G A G C T C A T G G T A C G A C T
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T A C G T A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCATGTTGGTGCT
GCNGCCATCTTG-----
 A C G T A G T C A G C T A C T G A G T C T G A C C T G A A C G T A C T G G C A T C G A T A T C G A C T G A G C T C A T G G T A C G A C T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T A C G T A C G T

GCM1/MA0646.1/Jaspar

Match Rank:3
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CTGCCATGTTGGTGCT
----CATGCGGGTAC-
 A G T C A G C T A C T G A G T C T G A C C T G A A C G T A C T G G C A T C G A T A T C G A C T G A G C T C A T G G T A C G A C T
A C G T A C G T A C G T A C G T A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:4
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:CTGCCATGTTGGTGCT-----
------AGATGCTRCTRCCHT
 A G T C A G C T A C T G A G T C T G A C C T G A A C G T A C T G G C A T C G A T A T C G A C T G A G C T C A T G G T A C G A C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

YY2/MA0748.1/Jaspar

Match Rank:5
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CTGCCATGTTGGTGCT
GTCCGCCATTA-------
 A C G T A C G T A G T C A G C T A C T G A G T C T G A C C T G A A C G T A C T G G C A T C G A T A T C G A C T G A G C T C A T G G T A C G A C T
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF143/MA0088.2/Jaspar

Match Rank:6
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CTGCCATGTTGGTGCT
CAATGCATTGTGGGTA--
 A C G T A C G T A G T C A G C T A C T G A G T C T G A C C T G A A C G T A C T G G C A T C G A T A T C G A C T G A G C T C A T G G T A C G A C T
G A T C C T G A C T G A C A G T A C T G A G T C G C T A G A C T A G C T T C A G G A C T A C T G A C T G A C T G G C A T T C G A A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:7
Score:0.49
Offset:-4
Orientation:reverse strand
Alignment:----CTGCCATGTTGGTGCT
NNNANTGCAGTGCNNTT---
 A C G T A C G T A C G T A C G T A G T C A G C T A C T G A G T C T G A C C T G A A C G T A C T G G C A T C G A T A T C G A C T G A G C T C A T G G T A C G A C T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T A C G T A C G T A C G T

Myc/MA0147.2/Jaspar

Match Rank:8
Score:0.49
Offset:3
Orientation:forward strand
Alignment:CTGCCATGTTGGTGCT
---CCATGTGCTT---
 A G T C A G C T A C T G A G T C T G A C C T G A A C G T A C T G G C A T C G A T A T C G A C T G A G C T C A T G G T A C G A C T
A C G T A C G T A C G T T G A C A G T C C G T A A G C T A C T G A C G T A C T G A T G C G A C T A G C T A C G T A C G T A C G T

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:9
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--CTGCCATGTTGGTGCT--
ACTYKNATTCGTGNTACTTC
 A C G T A C G T A G T C A G C T A C T G A G T C T G A C C T G A A C G T A C T G G C A T C G A T A T C G A C T G A G C T C A T G G T A C G A C T A C G T A C G T
C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C

PB0122.1_Foxk1_2/Jaspar

Match Rank:10
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:CTGCCATGTTGGTGCT--
---NNNTGTTGTTGTTNG
 A G T C A G C T A C T G A G T C T G A C C T G A A C G T A C T G G C A T C G A T A T C G A C T G A G C T C A T G G T A C G A C T A C G T A C G T
A C G T A C G T A C G T C T G A C A T G C T A G G C A T C T A G G C A T A C G T C T A G A G C T A C G T C T A G G A C T C A G T C G A T C A T G