Information for 12-KGAGRTTASMAGS (Motif 26)

A C T G A C T G C G T A A C T G C T A G A C G T A G C T C G T A A T G C G T A C C T G A A C T G A T C G
Reverse Opposite:
A T G C A G T C A G C T C A T G A T C G A C G T T C G A C G T A A G T C G T A C A C G T A G T C G T A C
p-value:1e-8
log p-value:-2.071e+01
Information Content per bp:1.831
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif7.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets59.7 +/- 22.2bp
Average Position of motif in Background57.7 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:1
Score:0.61
Offset:1
Orientation:forward strand
Alignment:KGAGRTTASMAGS
-RGGATTAR----
 A C T G A C T G C G T A A C T G C T A G A C G T A G C T C G T A A T G C G T A C C T G A A C T G A T C G
A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T A C G T

Spz1/MA0111.1/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:KGAGRTTASMAGS
--AGGGTAACAGC
 A C T G A C T G C G T A A C T G C T A G A C G T A G C T C G T A A T G C G T A C C T G A A C T G A T C G
A C G T A C G T C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C

RARA/MA0729.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:KGAGRTTASMAGS------
-GAGGTCAAAAGGTCAATG
 A C T G A C T G C G T A A C T G C T A G A C G T A G C T C G T A A T G C G T A C C T G A A C T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:KGAGRTTASMAGS---
-GAGGTCAAAAGGTCA
 A C T G A C T G C G T A A C T G C T A G A C G T A G C T C G T A A T G C G T A C C T G A A C T G A T C G A C G T A C G T A C G T
A C G T T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A

PH0139.1_Pitx3/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--KGAGRTTASMAGS-
AGGGGGATTAGCTGCC
 A C G T A C G T A C T G A C T G C G T A A C T G C T A G A C G T A G C T C G T A A T G C G T A C C T G A A C T G A T C G A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:KGAGRTTASMAGS
--GGATTAGC---
 A C T G A C T G C G T A A C T G C T A G A C G T A G C T C G T A A T G C G T A C C T G A A C T G A T C G
A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--KGAGRTTASMAGS
AAGAGGATTAG----
 A C G T A C G T A C T G A C T G C G T A A C T G C T A G A C G T A G C T C G T A A T G C G T A C C T G A A C T G A T C G
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T A C G T A C G T

GATA2/MA0036.2/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:KGAGRTTASMAGS-
NCAGATAAGAANNN
 A C T G A C T G C G T A A C T G C T A G A C G T A G C T C G T A A T G C G T A C C T G A A C T G A T C G A C G T
C G T A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A C G T A G A C T G A T C G C A T

PITX3/MA0714.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:KGAGRTTASMAGS
-GGGATTANN---
 A C T G A C T G C G T A A C T G C T A G A C G T A G C T C G T A A T G C G T A C C T G A A C T G A T C G
A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:KGAGRTTASMAGS
NNGGATTAGN---
 A C T G A C T G C G T A A C T G C T A G A C G T A G C T C G T A A T G C G T A C C T G A A C T G A T C G
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T A C G T A C G T