Information for 7-TGTTAACAATCACRTT (Motif 12)

C G A T C A T G G A C T C G A T C T G A G T C A A G T C G T C A T C G A A C G T A T G C C G T A A T G C C T A G A C G T C A G T
Reverse Opposite:
G C T A C G T A G A T C A T C G C G A T A T C G G T C A A C G T A C G T C T A G A C G T G A C T C G T A C G T A G T A C C G T A
p-value:1e-12
log p-value:-2.816e+01
Information Content per bp:1.686
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets72.0 +/- 18.8bp
Average Position of motif in Background32.4 +/- 15.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox1/MA0870.1/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TGTTAACAATCACRTT---
----AACAATAACATTGTT
 C G A T C A T G G A C T C G A T C T G A G T C A A G T C G T C A T C G A A C G T A T G C C G T A A T G C C T A G A C G T C A G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A G C T A A G T C G T C A G T C A C G A T C G T A T C G A A T G C C G T A A C G T A G C T A C T G G A C T A G C T

PB0172.1_Sox1_2/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGTTAACAATCACRTT
NNNTAACAATTATAN-
 C G A T C A T G G A C T C G A T C T G A G T C A A G T C G T C A T C G A A C G T A T G C C G T A A T G C C T A G A C G T C A G T
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G A C G T

PB0109.1_Bbx_2/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTAACAATCACRTT
NNNNCTGTTAACNNTNN----
 A C G T A C G T A C G T A C G T A C G T C G A T C A T G G A C T C G A T C T G A G T C A A G T C G T C A T C G A A C G T A T G C C G T A A T G C C T A G A C G T C A G T
A G T C G A T C T G C A C G T A T A G C A G C T C A T G C A G T A G C T C T G A G T C A G A T C T C G A C T G A C G A T A G T C C T G A A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:4
Score:0.61
Offset:5
Orientation:forward strand
Alignment:TGTTAACAATCACRTT
-----CCAATCAA---
 C G A T C A T G G A C T C G A T C T G A G T C A A G T C G T C A T C G A A C G T A T G C C G T A A T G C C T A G A C G T C A G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T

SRY/MA0084.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TGTTAACAATCACRTT
-GTAAACAAT------
 C G A T C A T G G A C T C G A T C T G A G T C A A G T C G T C A T C G A A C G T A T G C C G T A A T G C C T A G A C G T C A G T
A C G T A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TGTTAACAATCACRTT
---NAACAAT------
 C G A T C A T G G A C T C G A T C T G A G T C A A G T C G T C A T C G A A C G T A T G C C G T A A T G C C T A G A C G T C A G T
A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TGTTAACAATCACRTT
NTTNAGAACAATTA----
 A C G T A C G T C G A T C A T G G A C T C G A T C T G A G T C A A G T C G T C A T C G A A C G T A T G C C G T A A T G C C T A G A C G T C A G T
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A A C G T A C G T A C G T A C G T

MLX/MA0663.1/Jaspar

Match Rank:8
Score:0.58
Offset:8
Orientation:reverse strand
Alignment:TGTTAACAATCACRTT--
--------ATCACGTGAT
 C G A T C A T G G A C T C G A T C T G A G T C A A G T C G T C A T C G A A C G T A T G C C G T A A T G C C T A G A C G T C A G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A G A C T G T A C C G T A G A T C A C T G A G C T C T A G T G C A G A C T

MLXIPL/MA0664.1/Jaspar

Match Rank:9
Score:0.57
Offset:8
Orientation:forward strand
Alignment:TGTTAACAATCACRTT--
--------ATCACGTGAT
 C G A T C A T G G A C T C G A T C T G A G T C A A G T C G T C A T C G A A C G T A T G C C G T A A T G C C T A G A C G T C A G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A G T A T G C C G T A T A G C T C A G A C G T A C T G G C T A G A C T

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:TGTTAACAATCACRTT
----AACAAT------
 C G A T C A T G G A C T C G A T C T G A G T C A A G T C G T C A T C G A A C G T A T G C C G T A A T G C C T A G A C G T C A G T
A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T A C G T A C G T A C G T