Information for 10-RRCTTTGAGTKTA (Motif 13)

C T G A C T G A A T G C A C G T A G C T C A G T A C T G C T G A A T C G C G A T C A T G A C G T C G T A
Reverse Opposite:
A C G T G T C A G T A C C G T A A T G C G A C T A G T C G C T A C T G A C G T A A T C G A G C T A G C T
p-value:1e-11
log p-value:-2.703e+01
Information Content per bp:1.755
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif20.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets59.6 +/- 22.5bp
Average Position of motif in Background36.8 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:RRCTTTGAGTKTA-
---CTTGAGTGGCT
 C T G A C T G A A T G C A C G T A G C T C A G T A C T G C T G A A T C G C G A T C A T G A C G T C G T A A C G T
A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:RRCTTTGAGTKTA
-CCTTTGATGT--
 C T G A C T G A A T G C A C G T A G C T C A G T A C T G C T G A A T C G C G A T C A T G A C G T C G T A
A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T A C G T A C G T

IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:RRCTTTGAGTKTA
-RSTTTCRSTTTC
 C T G A C T G A A T G C A C G T A G C T C A G T A C T G C T G A A T C G C G A T C A T G A C G T C G T A
A C G T T C G A A T G C A C G T A C G T A G C T A G T C C T G A A T G C G C A T G A C T A G C T G A T C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:RRCTTTGAGTKTA-
----TTGAGTGSTT
 C T G A C T G A A T G C A C G T A G C T C A G T A C T G C T G A A T C G C G A T C A T G A C G T C G T A A C G T
A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:5
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:RRCTTTGAGTKTA
-ACTTTCACTTTC
 C T G A C T G A A T G C A C G T A G C T C A G T A C T G C T G A A T C G C G A T C A T G A C G T C G T A
A C G T C T G A A T G C G A C T C G A T A G C T A G T C C G T A A T G C A C G T A C G T G A C T A G T C

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:6
Score:0.53
Offset:3
Orientation:forward strand
Alignment:RRCTTTGAGTKTA
---BTBRAGTGSN
 C T G A C T G A A T G C A C G T A G C T C A G T A C T G C T G A A T C G C G A T C A T G A C G T C G T A
A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.53
Offset:4
Orientation:forward strand
Alignment:RRCTTTGAGTKTA-
----TTRAGTGSYK
 C T G A C T G A A T G C A C G T A G C T C A G T A C T G C T G A A T C G C G A T C A T G A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:RRCTTTGAGTKTA
---CTYRAGTGSY
 C T G A C T G A A T G C A C G T A G C T C A G T A C T G C T G A A T C G C G A T C A T G A C G T C G T A
A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-RRCTTTGAGTKTA
TGACCTTGAN----
 A C G T C T G A C T G A A T G C A C G T A G C T C A G T A C T G C T G A A T C G C G A T C A T G A C G T C G T A
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--RRCTTTGAGTKTA
TGGACTTTGNNCTCN
 A C G T A C G T C T G A C T G A A T G C A C G T A G C T C A G T A C T G C T G A A T C G C G A T C A T G A C G T C G T A
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T