Information for 9-CTTGCTAGCG (Motif 24)

A G T C A C G T A C G T A C T G A G T C C G A T C G T A A C T G A T G C A C T G
Reverse Opposite:
A G T C A T C G A G T C A C G T C G T A A C T G A G T C C G T A C G T A A C T G
p-value:1e-5
log p-value:-1.337e+01
Information Content per bp:1.944
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif17.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets60.4 +/- 23.1bp
Average Position of motif in Background47.2 +/- 22.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0054.1_Rfx3_1/Jaspar

Match Rank:1
Score:0.63
Offset:-7
Orientation:reverse strand
Alignment:-------CTTGCTAGCG------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G A G T C C G A T C G T A A C T G A T G C A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CTTGCTAGCG--
NNCGTTGCTATGGNN
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G A G T C C G A T C G T A A C T G A T G C A C T G A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CTTGCTAGCG
CTGTTGCTAGGS
 A C G T A C G T A G T C A C G T A C G T A C T G A G T C C G A T C G T A A C T G A T G C A C T G
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CTTGCTAGCG--
NCCGTTGCTANGNGN
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G A G T C C G A T C G T A A C T G A T G C A C T G A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

PB0050.1_Osr1_1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTTGCTAGCG-----
TNNTGCTACTGTNNNN
 A C G T A G T C A C G T A C G T A C T G A G T C C G A T C G T A A C T G A T G C A C T G A C G T A C G T A C G T A C G T A C G T
G A C T C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C T A G A C G T C G T A G C T A C G T A C G A T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CTTGCTAGCG
NNACTTGCCTT--
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G A G T C C G A T C G T A A C T G A T G C A C T G
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T

PB0051.1_Osr2_1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CTTGCTAGCG-----
CNNNGCTACTGTANNN
 A C G T A G T C A C G T A C G T A C T G A G T C C G A T C G T A A C T G A T G C A C T G A C G T A C G T A C G T A C G T A C G T
G A T C C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C A T G A C G T C G T A A G T C C G T A C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CTTGCTAGCG
CTTGGCAA--
 A G T C A C G T A C G T A C T G A G T C C G A T C G T A A C T G A T G C A C T G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CTTGCTAGCG----
KGTTGCTAGGMAACA
 A C G T A G T C A C G T A C G T A C T G A G T C C G A T C G T A A C T G A T G C A C T G A C G T A C G T A C G T A C G T
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CTTGCTAGCG
-TTGACAGC-
 A G T C A C G T A C G T A C T G A G T C C G A T C G T A A C T G A T G C A C T G
A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T