Information for 8-ACATAGGTCT (Motif 23)

C G T A G T A C C G T A A G C T C T G A A C T G C T A G A G C T A T G C A C G T
Reverse Opposite:
C G T A A T C G C T G A A G T C A G T C A G C T C T G A A C G T A C T G C G A T
p-value:1e-7
log p-value:-1.842e+01
Information Content per bp:1.862
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.92%
Number of Background Sequences with motif71.2
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets57.0 +/- 18.6bp
Average Position of motif in Background50.7 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NEUROG2/MA0669.1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-ACATAGGTCT
AACATATGTC-
 A C G T C G T A G T A C C G T A A G C T C T G A A C T G C T A G A G C T A T G C A C G T
T C G A T G C A G A T C C T G A A C G T T G C A G C A T A C T G A G C T A G T C A C G T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ACATAGGTCT
AACAAAGG---
 A C G T C G T A G T A C C G T A A G C T C T G A A C T G C T A G A G C T A T G C A C G T
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ACATAGGTCT-
TATAAGTAGGTCAA
 A C G T A C G T A C G T C G T A G T A C C G T A A G C T C T G A A C T G C T A G A G C T A T G C A C G T A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:ACATAGGTCT
AAYTAGGTCA
 C G T A G T A C C G T A A G C T C T G A A C T G C T A G A G C T A T G C A C G T
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

Twist2/MA0633.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ACATAGGTCT
NACATATGGN-
 A C G T C G T A G T A C C G T A A G C T C T G A A C T G C T A G A G C T A T G C A C G T
G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T A C G T

Atoh1/MA0461.2/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-ACATAGGTCT
AACATATGTT-
 A C G T C G T A G T A C C G T A A G C T C T G A A C T G C T A G A G C T A T G C A C G T
T C G A T G C A T G A C T C G A C A G T G T C A C G A T C A T G A C G T G A C T A C G T

BHLHE23/MA0817.1/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ACATAGGTCT
NAACATATGTTT
 A C G T A C G T C G T A G T A C C G T A A G C T C T G A A C T G C T A G A G C T A T G C A C G T
G C T A C T G A T G C A T G A C C T G A A C G T T C G A G A C T A C T G A C G T A G C T G C A T

NEUROD2/MA0668.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-ACATAGGTCT
ACCATATGGC-
 A C G T C G T A G T A C C G T A A G C T C T G A A C T G C T A G A G C T A T G C A C G T
C T G A T G A C G T A C C T G A A C G T C T G A G A C T A T C G A C T G A G T C A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.59
Offset:4
Orientation:forward strand
Alignment:ACATAGGTCT--
----AGGCCTNG
 C G T A G T A C C G T A A G C T C T G A A C T G C T A G A G C T A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---ACATAGGTCT
AAAACAAAGG---
 A C G T A C G T A C G T C G T A G T A C C G T A A G C T C T G A A C T G C T A G A G C T A T G C A C G T
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T