Information for 2-GACAGGCTGCYAAGAG (Motif 2)

C T A G C G T A G T A C C G T A A C T G C T A G A G T C C G A T C T A G A T G C A G T C C T G A C T G A A T C G C T G A T A C G
Reverse Opposite:
A T G C A G C T A T G C A G C T G A C T C T A G A T C G A G T C G C T A A C T G A G T C A G T C C G A T C A T G A C G T A G T C
p-value:1e-14
log p-value:-3.252e+01
Information Content per bp:1.743
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.7 +/- 24.8bp
Average Position of motif in Background52.1 +/- 11.1bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GACAGGCTGCYAAGAG
--TWGTCTGV------
 C T A G C G T A G T A C C G T A A C T G C T A G A G T C C G A T C T A G A T G C A G T C C T G A C T G A A T C G C T G A T A C G
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GACAGGCTGCYAAGAG
TGGCAGNCTGCCAG---
 A C G T C T A G C G T A G T A C C G T A A C T G C T A G A G T C C G A T C T A G A T G C A G T C C T G A C T G A A T C G C T G A T A C G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.52
Offset:6
Orientation:forward strand
Alignment:GACAGGCTGCYAAGAG
------TTGCCAAG--
 C T A G C G T A G T A C C G T A A C T G C T A G A G T C C G A T C T A G A T G C A G T C C T G A C T G A A T C G C T G A T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GACAGGCTGCYAAGAG
BTGABTGACAGS------
 A C G T A C G T C T A G C G T A G T A C C G T A A C T G C T A G A G T C C G A T C T A G A T G C A G T C C T G A C T G A A T C G C T G A T A C G
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GACAGGCTGCYAAGAG
AGAGRRACAGCWGAC--
 A C G T C T A G C G T A G T A C C G T A A C T G C T A G A G T C C G A T C T A G A T G C A G T C C T G A C T G A A T C G C T G A T A C G
T C G A C T A G C G T A C T A G C T G A T C A G C G T A A G T C C G T A T C A G T G A C G C A T A C T G C G T A A G T C A C G T A C G T

PB0154.1_Osr1_2/Jaspar

Match Rank:6
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GACAGGCTGCYAAGAG-
-ACATGCTACCTAATAC
 C T A G C G T A G T A C C G T A A C T G C T A G A G T C C G A T C T A G A T G C A G T C C T G A C T G A A T C G C T G A T A C G A C G T
A C G T C T G A G A T C G C T A G A C T T C A G G A T C A G C T C G T A G T A C G A T C G C A T T C G A G T C A C G A T G T C A T G A C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GACAGGCTGCYAAGAG
NTGATTGACAGN------
 A C G T A C G T C T A G C G T A G T A C C G T A A C T G C T A G A G T C C G A T C T A G A T G C A G T C C T G A C T G A A T C G C T G A T A C G
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GACAGGCTGCYAAGAG
TGAGTGACAGSC-----
 A C G T C T A G C G T A G T A C C G T A A C T G C T A G A G T C C G A T C T A G A T G C A G T C C T G A C T G A A T C G C T G A T A C G
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T A C G T A C G T A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:9
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:GACAGGCTGCYAAGAG---
----KGTTGCTAGGMAACA
 C T A G C G T A G T A C C G T A A C T G C T A G A G T C C G A T C T A G A T G C A G T C C T G A C T G A A T C G C T G A T A C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

PB0022.1_Gata5_1/Jaspar

Match Rank:10
Score:0.50
Offset:2
Orientation:forward strand
Alignment:GACAGGCTGCYAAGAG---
--TAAACTGATAAGAAGAT
 C T A G C G T A G T A C C G T A A C T G C T A G A G T C C G A T C T A G A T G C A G T C C T G A C T G A A T C G C T G A T A C G A C G T A C G T A C G T
A C G T A C G T G C A T C G T A C G T A C T G A A G T C G C A T A C T G C G T A C G A T G C T A C G T A T A C G T C G A T C G A C A T G C G T A C A G T