Information for 11-GGCAGCAGGACCC (Motif 14)

A C T G A C T G A G T C C G T A A C T G A G T C C G T A A C T G A C T G C G T A A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G A C G T A G T C A G T C A C G T A C T G A G T C A C G T A C T G A G T C A G T C
p-value:1e-5
log p-value:-1.380e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.34%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.5 +/- 31.1bp
Average Position of motif in Background63.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GGCAGCAGGACCC
GAGCACAGCAGGACA-
 A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G A G T C C G T A A C T G A C T G C G T A A G T C A G T C A G T C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GGCAGCAGGACCC-
DCHCAGCAGGRGGCC
 A C G T A C T G A C T G A G T C C G T A A C T G A G T C C G T A A C T G A C T G C G T A A G T C A G T C A G T C A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GGCAGCAGGACCC
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G A G T C C G T A A C T G A C T G C G T A A G T C A G T C A G T C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:4
Score:0.60
Offset:6
Orientation:forward strand
Alignment:GGCAGCAGGACCC---
------AAGACCCYYN
 A C T G A C T G A G T C C G T A A C T G A G T C C G T A A C T G A C T G C G T A A G T C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T G C A A C T G G T C A A G T C A G T C A G T C A G T C A G C T T G A C

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GGCAGCAGGACCC
ADGGYAGYAGCATCT
 A C G T A C G T A C T G A C T G A G T C C G T A A C T G A G T C C G T A A C T G A C T G C G T A A G T C A G T C A G T C
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GGCAGCAGGACCC
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G A G T C C G T A A C T G A C T G C G T A A G T C A G T C A G T C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GGCAGCAGGACCC
---ANCAGGATGT
 A C T G A C T G A G T C C G T A A C T G A G T C C G T A A C T G A C T G C G T A A G T C A G T C A G T C
A C G T A C G T A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GGCAGCAGGACCC
DCTCAGCAGG----
 A C G T A C T G A C T G A G T C C G T A A C T G A G T C C G T A A C T G A C T G C G T A A G T C A G T C A G T C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GGCAGCAGGACCC
CACAGCAGGGGG-
 A C T G A C T G A G T C C G T A A C T G A G T C C G T A A C T G A C T G C G T A A G T C A G T C A G T C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGCAGCAGGACCC-
GGTCANNGTGACCTN
 A C G T A C T G A C T G A G T C C G T A A C T G A G T C C G T A A C T G A C T G C G T A A G T C A G T C A G T C A C G T
C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T