Information for 5-TTAATCTAGA (Motif 5)

A C G T A C G T C G T A C G T A A C G T A G T C A C G T C G T A A C T G C G T A
Reverse Opposite:
G A C T A G T C C G A T G T C A C T A G G T C A A C G T A C G T G T C A C G T A
p-value:1e-12
log p-value:-2.915e+01
Information Content per bp:1.863
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.85%
Number of Background Sequences with motif58.5
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets37.3 +/- 27.0bp
Average Position of motif in Background42.6 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0185.1_Tcf1_2/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TTAATCTAGA---
NNTAATCCNGNCNN
 A C G T A C G T A C G T C G T A C G T A A C G T A G T C A C G T C G T A A C T G C G T A A C G T A C G T A C G T
G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A

OTX2/MA0712.1/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TTAATCTAGA
TTAATCCT--
 A C G T A C G T C G T A C G T A A C G T A G T C A C G T C G T A A C T G C G T A
G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TTAATCTAGA
YTAATCCY--
 A C G T A C G T C G T A C G T A A C G T A G T C A C G T C G T A A C T G C G T A
G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TTAATCTAGA
TTAATCCC--
 A C G T A C G T C G T A C G T A A C G T A G T C A C G T C G T A A C T G C G T A
G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TTAATCTAGA
TTTAAT-----
 A C G T A C G T A C G T C G T A C G T A A C G T A G T C A C G T C G T A A C T G C G T A
G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TTAATCTAGA
NYTAATCCYB-
 A C G T A C G T A C G T C G T A C G T A A C G T A G T C A C G T C G T A A C T G C G T A
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TTAATCTAGA
GCTAATCC---
 A C G T A C G T A C G T C G T A C G T A A C G T A G T C A C G T C G T A A C T G C G T A
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:8
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TTAATCTAGA
ATATTAATTAA--
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A G T C A C G T C G T A A C T G C G T A
C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TTAATCTAGA
TTAATCCG--
 A C G T A C G T C G T A C G T A A C G T A G T C A C G T C G T A A C T G C G T A
G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:10
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TTAATCTAGA
CTTAATCCC--
 A C G T A C G T A C G T C G T A C G T A A C G T A G T C A C G T C G T A A C T G C G T A
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T