Information for 10-TTGCCCCTGCTGG (Motif 17)

G A C T A C G T A C T G A G T C A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C T G
Reverse Opposite:
A G T C G T A C C G T A A C T G A G T C C G T A A C T G A C T G A C T G A C T G A G T C G T C A C G T A
p-value:1e-8
log p-value:-1.972e+01
Information Content per bp:1.914
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets66.0 +/- 16.4bp
Average Position of motif in Background65.7 +/- 18.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:TTGCCCCTGCTGG-
--CCCCCTGCTGTG
 G A C T A C G T A C T G A G T C A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C T G A C G T
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TTGCCCCTGCTGG--
GGCCYCCTGCTGDGH
 G A C T A C G T A C T G A G T C A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C T G A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------TTGCCCCTGCTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C G T A C T G A G T C A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C T G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TTGCCCCTGCTGG
SNGCACCTGCHS-
 G A C T A C G T A C T G A G T C A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C T G
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TTGCCCCTGCTGG----
--TCNCCTGCTGNGNNN
 G A C T A C G T A C T G A G T C A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

CTCF/MA0139.1/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TTGCCCCTGCTGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T G A C T A C G T A C T G A G T C A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.64
Offset:5
Orientation:forward strand
Alignment:TTGCCCCTGCTGG--
-----CCTGCTGAGH
 G A C T A C G T A C T G A G T C A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TTGCCCCTGCTGG----
--TNTCCTGCTGTGNNG
 G A C T A C G T A C T G A G T C A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TTGCCCCTGCTGG
TTCCCCCTAC---
 G A C T A C G T A C T G A G T C A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C T G
A G C T G A C T G T A C G T A C A T G C G T A C G T A C A C G T G T A C T A G C A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TTGCCCCTGCTGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T G A C T A C G T A C T G A G T C A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C T G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A