Information for 6-CGGTCGGCTT (Motif 6)

A T G C A C T G A C T G A C G T A G T C A C T G A C T G A G T C A C G T A C G T
Reverse Opposite:
C G T A G T C A C T A G A G T C G T A C C T A G C G T A A G T C A G T C A T C G
p-value:1e-13
log p-value:-3.063e+01
Information Content per bp:1.880
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif12.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets43.1 +/- 24.7bp
Average Position of motif in Background53.7 +/- 35.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CGGTCGGCTT---
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A T G C A C T G A C T G A C G T A G T C A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

POL001.1_MTE/Jaspar

Match Rank:2
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----CGGTCGGCTT----
NCGACCGCTCCGCTCGAAA
 A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G A C G T A G T C A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T C A G A T G C C T A G C G T A A T G C A G T C A C T G G A C T A C G T A T G C A T G C A C T G A G T C A C G T A G T C A C T G C T G A C T G A T C G A

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CGGTCGGCTT-
-GCTCGGSCTC
 A T G C A C T G A C T G A C G T A G T C A C T G A C T G A G T C A C G T A C G T A C G T
A C G T C T A G G T A C A C G T A T G C C T A G A C T G T A C G A G T C A C G T A G T C

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CGGTCGGCTT
-GGTTGGCAT
 A T G C A C T G A C T G A C G T A G T C A C T G A C T G A G T C A C G T A C G T
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:5
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CGGTCGGCTT---
NNANTGGTGGTCTTNNN
 A C G T A C G T A C G T A C G T A T G C A C T G A C T G A C G T A G T C A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T
T C A G A G C T G T C A T G C A C G A T C T A G C T A G C A G T A T C G C A T G C A G T T G A C A C G T G A C T G T C A G C A T C T A G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CGGTCGGCTT
CTGTCTGG--
 A T G C A C T G A C T G A C G T A G T C A C T G A C T G A G T C A C G T A C G T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CGGTCGGCTT
VBSYGTCTGG--
 A C G T A C G T A T G C A C T G A C T G A C G T A G T C A C T G A C T G A G T C A C G T A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

PB0179.1_Sp100_2/Jaspar

Match Rank:8
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CGGTCGGCTT----
TCCGTCGCTTAAAAG
 A C G T A T G C A C T G A C T G A C G T A G T C A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T G C G A T C T C A G G C A T T G A C A C T G G A T C A C G T C A G T G C T A C G T A G C T A C G T A A C T G

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:CGGTCGGCTT
-----NGCTN
 A T G C A C T G A C T G A C G T A G T C A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

HINFP/MA0131.2/Jaspar

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--CGGTCGGCTT
CAACGTCCGCGG
 A C G T A C G T A T G C A C T G A C T G A C G T A G T C A C T G A C T G A G T C A C G T A C G T
A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G