Information for 8-TAGAGGSCAC (Motif 6)

A G C T C G T A A T C G C G T A A C T G A C T G A T G C A G T C T C G A G A T C
Reverse Opposite:
C T A G A G C T C T A G A T C G T G A C A G T C A C G T A T G C C G A T C T G A
p-value:1e-15
log p-value:-3.576e+01
Information Content per bp:1.773
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.19%
Number of Background Sequences with motif179.7
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets51.3 +/- 26.0bp
Average Position of motif in Background48.3 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TAGAGGSCAC
GGTTAGAGACCT-
 A C G T A C G T A C G T A G C T C G T A A T C G C G T A A C T G A C T G A T G C A G T C T C G A G A T C
C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TAGAGGSCAC
CAAAGGTCAG
 A G C T C G T A A T C G C G T A A C T G A C T G A T G C A G T C T C G A G A T C
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TAGAGGSCAC
-TRAGGTCA-
 A G C T C G T A A T C G C G T A A C T G A C T G A T G C A G T C T C G A G A T C
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TAGAGGSCAC---
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T A G C T C G T A A T C G C G T A A C T G A C T G A T G C A G T C T C G A G A T C A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TAGAGGSCAC
-AGRGGTCA-
 A G C T C G T A A T C G C G T A A C T G A C T G A T G C A G T C T C G A G A T C
A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TAGAGGSCAC
--AAGGTCAC
 A G C T C G T A A T C G C G T A A C T G A C T G A T G C A G T C T C G A G A T C
A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TAGAGGSCAC-----
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A G C T C G T A A T C G C G T A A C T G A C T G A T G C A G T C T C G A G A T C A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TAGAGGSCAC---
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T A G C T C G T A A T C G C G T A A C T G A C T G A T G C A G T C T C G A G A T C A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------TAGAGGSCAC---
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G T A A T C G C G T A A C T G A C T G A T G C A G T C T C G A G A T C A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TAGAGGSCAC---
GGCAAAAGTCCAATAA
 A C G T A C G T A C G T A G C T C G T A A T C G C G T A A C T G A C T G A T G C A G T C T C G A G A T C A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T