Information for 16-ATCACTTAGC (Motif 39)

T G C A A C G T A G T C C T G A A T G C A C G T C A G T C G T A C T A G A G T C
Reverse Opposite:
A C T G G A T C A C G T G T C A G T C A A T C G G A C T A C T G G T C A A C G T
p-value:1e-7
log p-value:-1.663e+01
Information Content per bp:1.756
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.31%
Number of Background Sequences with motif208.0
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets48.5 +/- 25.9bp
Average Position of motif in Background48.4 +/- 32.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:ATCACTTAGC
-BCMATTAG-
 T G C A A C G T A G T C C T G A A T G C A C G T C A G T C G T A C T A G A G T C
A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:ATCACTTAGC
NNCAATTANN
 T G C A A C G T A G T C C T G A A T G C A C G T C A G T C G T A C T A G A G T C
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C

NKX3-2/MA0122.2/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:ATCACTTAGC
ACCACTTAA-
 T G C A A C G T A G T C C T G A A T G C A C G T C A G T C G T A C T A G A G T C
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T

ISL2/MA0914.1/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:forward strand
Alignment:ATCACTTAGC
-GCACTTAA-
 T G C A A C G T A G T C C T G A A T G C A C G T C A G T C G T A C T A G A G T C
A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T

PH0167.1_Tcf1/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--ATCACTTAGC-----
NTTTTAGTTAACNNAGN
 A C G T A C G T T G C A A C G T A G T C C T G A A T G C A C G T C A G T C G T A C T A G A G T C A C G T A C G T A C G T A C G T A C G T
T G C A G A C T G C A T A C G T G A C T C T G A A T C G G C A T C G A T C G T A C T G A T A G C A G C T T C G A T G C A T A C G C T A G

Nkx3-1/MA0124.2/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:ATCACTTAGC
ACCACTTAA-
 T G C A A C G T A G T C C T G A A T G C A C G T C A G T C G T A C T A G A G T C
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:7
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:ATCACTTAGC
ANCGTTTANN
 T G C A A C G T A G T C C T G A A T G C A C G T C A G T C G T A C T A G A G T C
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C

PB0081.1_Tcf1_1/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ATCACTTAGC-----
NNNTTAGTTAACTNANN
 A C G T A C G T T G C A A C G T A G T C C T G A A T G C A C G T C A G T C G T A C T A G A G T C A C G T A C G T A C G T A C G T A C G T
G A C T C A G T G A C T A G C T G A C T C T G A T A C G G A C T C G A T C G T A C G T A A G T C A G C T C T G A T C G A C T A G A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ATCACTTAGC---
CATAACCACTTAACAAC
 A C G T A C G T A C G T A C G T T G C A A C G T A G T C C T G A A T G C A C G T C A G T C G T A C T A G A G T C A C G T A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ATCACTTAGC
TAATCAATTA--
 A C G T A C G T T G C A A C G T A G T C C T G A A T G C A C G T C A G T C G T A C T A G A G T C
C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A A C G T A C G T