Information for 6-TTSGCAGCAAGAGACT (Motif 11)

C G A T A C G T A T C G A C T G A G T C C G T A A C T G G T A C C T G A C T G A A T C G G C T A T C A G C G T A T A G C G C A T
Reverse Opposite:
C G T A A T C G G C A T A G T C C G A T T A G C G A C T G A C T A C T G A G T C C G A T A C T G G T A C A T G C G T C A C G T A
p-value:1e-11
log p-value:-2.741e+01
Information Content per bp:1.688
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.0 +/- 24.1bp
Average Position of motif in Background28.7 +/- 14.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0206.1_Zic2_2/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TTSGCAGCAAGAGACT
CCACACAGCAGGAGA--
 A C G T C G A T A C G T A T C G A C T G A G T C C G T A A C T G G T A C C T G A C T G A A T C G G C T A T C A G C G T A T A G C G C A T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TTSGCAGCAAGAGACT
CCACACAGCAGGAGA--
 A C G T C G A T A C G T A T C G A C T G A G T C C G T A A C T G G T A C C T G A C T G A A T C G G C T A T C A G C G T A T A G C G C A T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TTSGCAGCAAGAGACT
GAGCACAGCAGGACA--
 A C G T C G A T A C G T A T C G A C T G A G T C C G T A A C T G G T A C C T G A C T G A A T C G G C T A T C A G C G T A T A G C G C A T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TTSGCAGCAAGAGACT
-DCHCAGCAGGRGGCC
 C G A T A C G T A T C G A C T G A G T C C G T A A C T G G T A C C T G A C T G A A T C G G C T A T C A G C G T A T A G C G C A T
A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TTSGCAGCAAGAGACT
-DCTCAGCAGG-----
 C G A T A C G T A T C G A C T G A G T C C G T A A C T G G T A C C T G A C T G A A T C G G C T A T C A G C G T A T A G C G C A T
A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TTSGCAGCAAGAGACT
--CACAGCAGGGGG--
 C G A T A C G T A T C G A C T G A G T C C G T A A C T G G T A C C T G A C T G A A T C G G C T A T C A G C G T A T A G C G C A T
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TTSGCAGCAAGAGACT
NNTTGGCANN--------
 A C G T A C G T C G A T A C G T A T C G A C T G A G T C C G T A A C T G G T A C C T G A C T G A A T C G G C T A T C A G C G T A T A G C G C A T
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTSGCAGCAAGAGACT
CTTGGCAA---------
 A C G T C G A T A C G T A T C G A C T G A G T C C G T A A C T G G T A C C T G A C T G A A T C G G C T A T C A G C G T A T A G C G C A T
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TTSGCAGCAAGAGACT
--CACAGN--------
 C G A T A C G T A T C G A C T G A G T C C G T A A C T G G T A C C T G A C T G A A T C G G C T A T C A G C G T A T A G C G C A T
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TTSGCAGCAAGAGACT
TTGACAGC--------
 C G A T A C G T A T C G A C T G A G T C C G T A A C T G G T A C C T G A C T G A A T C G G C T A T C A G C G T A T A G C G C A T
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T