Information for 7-GTTGGCATGC (Motif 6)

A T C G C G A T C G A T A C T G T A C G A G T C C G T A A C G T A T C G T A G C
Reverse Opposite:
A T C G A T G C C G T A A C G T A C T G A T G C G T A C C G T A C G T A A T G C
p-value:1e-12
log p-value:-2.992e+01
Information Content per bp:1.854
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.92%
Number of Background Sequences with motif70.7
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets51.2 +/- 23.2bp
Average Position of motif in Background46.9 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-GTTGGCATGC
GGTTGGCAT--
 A C G T A T C G C G A T C G A T A C T G T A C G A G T C C G T A A C G T A T C G T A G C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.80
Offset:-5
Orientation:reverse strand
Alignment:-----GTTGGCATGC-
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A C G T A T C G C G A T C G A T A C T G T A C G A G T C C G T A A C G T A T C G T A G C A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GTTGGCATGC
NNTTGGCANN-
 A C G T A T C G C G A T C G A T A C T G T A C G A G T C C G T A A C G T A T C G T A G C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GTTGGCATGC
NTTGGCANN-
 A T C G C G A T C G A T A C T G T A C G A G T C C G T A A C G T A T C G T A G C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GTTGGCATGC
-TTGGCA---
 A T C G C G A T C G A T A C T G T A C G A G T C C G T A A C G T A T C G T A G C
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GTTGGCATGC----
GTTGCCATGGNAAC
 A T C G C G A T C G A T A C T G T A C G A G T C C G T A A C G T A T C G T A G C A C G T A C G T A C G T A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GTTGGCATGC
CTTGGCAA--
 A T C G C G A T C G A T A C T G T A C G A G T C C G T A A C G T A T C G T A G C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GTTGGCATGC
NGTGGGCAT--
 A C G T A T C G C G A T C G A T A C T G T A C G A G T C C G T A A C G T A T C G T A G C
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GTTGGCATGC---
GGTTGCCATGGCAA
 A C G T A T C G C G A T C G A T A C T G T A C G A G T C C G T A A C G T A T C G T A G C A C G T A C G T A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GTTGGCATGC---
NGTTGCCATGGCAA
 A C G T A T C G C G A T C G A T A C T G T A C G A G T C C G T A A C G T A T C G T A G C A C G T A C G T A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A