Information for 5-GCCCTGCCTTTGA (Motif 9)

A C T G G T A C G T A C G T A C A G C T A C T G A G T C A G T C A G C T A C G T A G C T A T C G C G T A
Reverse Opposite:
C G A T A T G C C T G A G T C A C T G A A C T G A C T G A G T C C T G A A C T G A C T G A C T G A G T C
p-value:1e-11
log p-value:-2.604e+01
Information Content per bp:1.803
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif8.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets46.2 +/- 21.1bp
Average Position of motif in Background59.2 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0180.1_Sp4_2/Jaspar

Match Rank:1
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---GCCCTGCCTTTGA
NNGGCCACGCCTTTN-
 A C G T A C G T A C G T A C T G G T A C G T A C G T A C A G C T A C T G A G T C A G T C A G C T A C G T A G C T A T C G C G T A
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:2
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GCCCTGCCTTTGA---
----TNCCTTTGATGT
 A C T G G T A C G T A C G T A C A G C T A C T G A G T C A G T C A G C T A C G T A G C T A T C G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A T G C A G T C A G T C A G C T A C G T A C G T T A C G C G T A C G A T T A C G G A C T

Nr5a2/MA0505.1/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GCCCTGCCTTTGA----
--GCTGACCTTGAACTN
 A C T G G T A C G T A C G T A C A G C T A C T G A G T C A G T C A G C T A C G T A G C T A T C G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

TCF7L2/MA0523.1/Jaspar

Match Rank:4
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GCCCTGCCTTTGA-----
----TNCCTTTGATCTTN
 A C T G G T A C G T A C G T A C A G C T A C T G A G T C A G T C A G C T A C G T A G C T A T C G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A G C T A G T C A G T C A G C T A G C T A C G T A T C G C G T A C G A T T A G C G A C T A G C T G A C T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GCCCTGCCTTTGA---
----TGACCTTGACCT
 A C T G G T A C G T A C G T A C A G C T A C T G A G T C A G T C A G C T A C G T A G C T A T C G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:6
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:GCCCTGCCTTTGA---
------CCTTTGAWGT
 A C T G G T A C G T A C G T A C A G C T A C T G A G T C A G T C A G C T A C G T A G C T A T C G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GCCCTGCCTTTGA-
----TGACCTTGAN
 A C T G G T A C G T A C G T A C A G C T A C T G A G T C A G T C A G C T A C G T A G C T A T C G C G T A A C G T
A C G T A C G T A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:GCCCTGCCTTTGA---
------CCTTTGATGT
 A C T G G T A C G T A C G T A C A G C T A C T G A G T C A G T C A G C T A C G T A G C T A T C G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

POL003.1_GC-box/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCCCTGCCTTTGA
NAGCCCCGCCCCCN-
 A C G T A C G T A C T G G T A C G T A C G T A C A G C T A C T G A G T C A G T C A G C T A C G T A G C T A T C G C G T A
G T A C T C G A T C A G G T A C G A T C T G A C G A T C C A T G A G T C A G T C A G T C G T A C G A T C G C A T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:10
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GCCCTGCCTTTGA-
----TGACCTTGAV
 A C T G G T A C G T A C G T A C A G C T A C T G A G T C A G T C A G C T A C G T A G C T A T C G C G T A A C G T
A C G T A C G T A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A