Information for 3-TTCHGCACHTTGBCAA (Motif 8)

A C G T A C G T A G T C G A T C C T A G A G T C C G T A A G T C G T A C A G C T A C G T A T C G A C T G A G T C C G T A C G T A
Reverse Opposite:
A C G T C G A T A C T G T A G C A T G C G T C A C T G A C A G T A C T G A C G T A C T G G A T C C A T G A C T G G T C A C G T A
p-value:1e-13
log p-value:-3.044e+01
Information Content per bp:1.768
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.5 +/- 21.3bp
Average Position of motif in Background53.4 +/- 3.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TTCHGCACHTTGBCAA-----
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A G T C G A T C C T A G A G T C C G T A A G T C G T A C A G C T A C G T A T C G A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:2
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TTCHGCACHTTGBCAA
NNTNCGCACCTGTNGAN
 A C G T A C G T A C G T A G T C G A T C C T A G A G T C C G T A A G T C G T A C A G C T A C G T A T C G A C T G A G T C C G T A C G T A
G C A T C A G T G C A T A G C T G A T C T C A G G T A C C T G A A T G C T A G C A C G T A C T G A C G T C A T G C A T G G T C A A G C T

PB0013.1_Eomes_1/Jaspar

Match Rank:3
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---TTCHGCACHTTGBCAA
NNTTTTCACACCTTNNN--
 A C G T A C G T A C G T A C G T A C G T A G T C G A T C C T A G A G T C C G T A A G T C G T A C A G C T A C G T A T C G A C T G A G T C C G T A C G T A
C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C A C G T A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TTCHGCACHTTGBCAA
TTGCAACATN-------
 A C G T A C G T A C G T A G T C G A T C C T A G A G T C C G T A A G T C G T A C A G C T A C G T A T C G A C T G A G T C C G T A C G T A
C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TBR1/MA0802.1/Jaspar

Match Rank:5
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TTCHGCACHTTGBCAA
TTTCACACCT------
 A C G T A C G T A G T C G A T C C T A G A G T C C G T A A G T C G T A C A G C T A C G T A T C G A C T G A G T C C G T A C G T A
C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T

TBX2/MA0688.1/Jaspar

Match Rank:6
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TTCHGCACHTTGBCAA
TTTCACACCTN-----
 A C G T A C G T A G T C G A T C C T A G A G T C C G T A A G T C G T A C A G C T A C G T A T C G A C T G A G T C C G T A C G T A
G C A T G C A T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T G C A T A C G T A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:forward strand
Alignment:TTCHGCACHTTGBCAA
--TGGCACCATGCCAA
 A C G T A C G T A G T C G A T C C T A G A G T C C G T A A G T C G T A C A G C T A C G T A T C G A C T G A G T C C G T A C G T A
A C G T A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

TCF4/MA0830.1/Jaspar

Match Rank:8
Score:0.52
Offset:3
Orientation:forward strand
Alignment:TTCHGCACHTTGBCAA
---CGCACCTGCT---
 A C G T A C G T A G T C G A T C C T A G A G T C C G T A A G T C G T A C A G C T A C G T A T C G A C T G A G T C C G T A C G T A
A C G T A C G T A C G T G A T C T C A G G A T C C G T A A T G C T A G C C G A T C T A G A T G C C G A T A C G T A C G T A C G T

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:TTCHGCACHTTGBCAA-----
-TCAGCACCATGGACAGCTCC
 A C G T A C G T A G T C G A T C C T A G A G T C C G T A A G T C G T A C A G C T A C G T A T C G A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.51
Offset:9
Orientation:forward strand
Alignment:TTCHGCACHTTGBCAA-
---------TTGCCAAG
 A C G T A C G T A G T C G A T C C T A G A G T C C G T A A G T C G T A C A G C T A C G T A T C G A C T G A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G