Information for 7-GAGKGCCAAATAC (Motif 8)

A T C G C T G A A C T G C A G T A C T G G T A C G T A C G T C A G T C A T C G A A C G T T G C A G A T C
Reverse Opposite:
C A T G A C G T T G C A A G C T A C G T A C G T A C T G A C T G G T A C G T C A T G A C A G C T T A G C
p-value:1e-13
log p-value:-3.081e+01
Information Content per bp:1.617
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.7 +/- 23.5bp
Average Position of motif in Background60.3 +/- 11.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:GAGKGCCAAATAC
---TGCCAA----
 A T C G C T G A A C T G C A G T A C T G G T A C G T A C G T C A G T C A T C G A A C G T T G C A G A T C
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.78
Offset:1
Orientation:forward strand
Alignment:GAGKGCCAAATAC
-CGTGCCAAG---
 A T C G C T G A A C T G C A G T A C T G G T A C G T A C G T C A G T C A T C G A A C G T T G C A G A T C
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.78
Offset:1
Orientation:forward strand
Alignment:GAGKGCCAAATAC
-GGTGCCAAGT--
 A T C G C T G A A C T G C A G T A C T G G T A C G T A C G T C A G T C A T C G A A C G T T G C A G A T C
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GAGKGCCAAATAC
--ATGCCAACC--
 A T C G C T G A A C T G C A G T A C T G G T A C G T A C G T C A G T C A T C G A A C G T T G C A G A T C
A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GAGKGCCAAATAC
--TTGCCAAG---
 A T C G C T G A A C T G C A G T A C T G G T A C G T A C G T C A G T C A T C G A A C G T T G C A G A T C
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GAGKGCCAAATAC
--ATGCCCACC--
 A T C G C T G A A C T G C A G T A C T G G T A C G T A C G T C A G T C A T C G A A C G T T G C A G A T C
A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GAGKGCCAAATAC
ACTAGCCAATCA-
 A T C G C T G A A C T G C A G T A C T G G T A C G T A C G T C A G T C A T C G A A C G T T G C A G A T C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:8
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GAGKGCCAAATAC
---AGCCAATCGG
 A T C G C T G A A C T G C A G T A C T G G T A C G T A C G T C A G T C A T C G A A C G T T G C A G A T C
A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

PB0133.1_Hic1_2/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAGKGCCAAATAC-
GGGTGTGCCCAAAAGG
 A C G T A C G T A T C G C T G A A C T G C A G T A C T G G T A C G T A C G T C A G T C A T C G A A C G T T G C A G A T C A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

MSX2/MA0708.1/Jaspar

Match Rank:10
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GAGKGCCAAATAC
-----CCAATTAA
 A T C G C T G A A C T G C A G T A C T G G T A C G T A C G T C A G T C A T C G A A C G T T G C A G A T C
A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A