Information for 12-GAGGCTCCGTGGC (Motif 22)

A C T G C G T A A C T G A C T G A G T C A C G T A G T C G T A C A T C G A C G T A C T G A C T G A G T C
Reverse Opposite:
C T A G G T A C A G T C T C G A A T G C A C T G A C T G G T C A C T A G A G T C A G T C C G A T T G A C
p-value:1e-8
log p-value:-1.853e+01
Information Content per bp:1.799
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif14.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets50.4 +/- 31.0bp
Average Position of motif in Background49.5 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GAGGCTCCGTGGC
---GCTCCG----
 A C T G C G T A A C T G A C T G A G T C A C G T A G T C G T A C A T C G A C G T A C T G A C T G A G T C
A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GAGGCTCCGTGGC-
TACGAGACTCCTCTAAC
 A C G T A C G T A C G T A C T G C G T A A C T G A C T G A G T C A C G T A G T C G T A C A T C G A C G T A C T G A C T G A G T C A C G T
C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GAGGCTCCGTGGC---
--GTTGCCATGGCAAC
 A C T G C G T A A C T G A C T G A G T C A C G T A G T C G T A C A T C G A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GAGGCTCCGTGGC--
-NGTTGCCATGGCAA
 A C T G C G T A A C T G A C T G A G T C A C G T A G T C G T A C A T C G A C G T A C T G A C T G A G T C A C G T A C G T
A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

CREB3L1/MA0839.1/Jaspar

Match Rank:5
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GAGGCTCCGTGGC--
-TGATGACGTGGCAN
 A C T G C G T A A C T G A C T G A G T C A C G T A G T C G T A C A T C G A C G T A C T G A C T G A G T C A C G T A C G T
A C G T G A C T C T A G T C G A G A C T A C T G G C T A A G T C A T C G A G C T C T A G C A T G G A T C C T G A A G C T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:6
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GAGGCTCCGTGGC-
-TGCCCTNAGGGCA
 A C T G C G T A A C T G A C T G A G T C A C G T A G T C G T A C A T C G A C G T A C T G A C T G A G T C A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:7
Score:0.51
Offset:2
Orientation:forward strand
Alignment:GAGGCTCCGTGGC----
--GTTGCCATGGCAACM
 A C T G C G T A A C T G A C T G A G T C A C G T A G T C G T A C A T C G A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:8
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:GAGGCTCCGTGGC-
-TGCCCTNAGGGCA
 A C T G C G T A A C T G A C T G A G T C A C G T A G T C G T A C A T C G A C G T A C T G A C T G A G T C A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:9
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:GAGGCTCCGTGGC-
-TGCCCNNAGGGCA
 A C T G C G T A A C T G A C T G A G T C A C G T A G T C G T A C A T C G A C G T A C T G A C T G A G T C A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:10
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:GAGGCTCCGTGGC-----
--GTTGCCATGGCAACCG
 A C T G C G T A A C T G A C T G A G T C A C G T A G T C G T A C A T C G A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G