Information for 2-CCACCAGGKGGCRCHA (Motif 2)

T A G C A G T C G C T A A T G C G A T C C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T A G T A G C G A T C T G C A
Reverse Opposite:
A C G T C T A G A T C G A G T C C A T G G T A C A G T C G T A C A G T C G T A C C G A T C T A G T A C G C G A T A C T G A T C G
p-value:1e-129
log p-value:-2.973e+02
Information Content per bp:1.684
Number of Target Sequences with motif91.0
Percentage of Target Sequences with motif10.86%
Number of Background Sequences with motif80.2
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets52.3 +/- 21.9bp
Average Position of motif in Background50.5 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.96
Offset:-3
Orientation:forward strand
Alignment:---CCACCAGGKGGCRCHA
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T T A G C A G T C G C T A A T G C G A T C C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T A G T A G C G A T C T G C A
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.96
Offset:-1
Orientation:reverse strand
Alignment:-CCACCAGGKGGCRCHA---
GCCASCAGGGGGCGCYVNNG
 A C G T T A G C A G T C G C T A A T G C G A T C C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T A G T A G C G A T C T G C A A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.94
Offset:-3
Orientation:reverse strand
Alignment:---CCACCAGGKGGCRCHA-
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T T A G C A G T C G C T A A T G C G A T C C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T A G T A G C G A T C T G C A A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CCACCAGGKGGCRCHA
CACAGCAGGGGG-----
 A C G T T A G C A G T C G C T A A T G C G A T C C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T A G T A G C G A T C T G C A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCACCAGGKGGCRCHA
DCHCAGCAGGRGGCC---
 A C G T A C G T T A G C A G T C G C T A A T G C G A T C C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T A G T A G C G A T C T G C A
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCACCAGGKGGCRCHA--
-NNNAAGGGGGCGGGNNN
 T A G C A G T C G C T A A T G C G A T C C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T A G T A G C G A T C T G C A A C G T A C G T
A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

ZIC4/MA0751.1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCACCAGGKGGCRCHA
NCNCAGCGGGGGGTC---
 A C G T A C G T T A G C A G T C G C T A A T G C G A T C C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T A G T A G C G A T C T G C A
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CCACCAGGKGGCRCHA
--AACAGATGGC----
 T A G C A G T C G C T A A T G C G A T C C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T A G T A G C G A T C T G C A
A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CCACCAGGKGGCRCHA
CACAGCGGGGGGTC---
 A C G T T A G C A G T C G C T A A T G C G A T C C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T A G T A G C G A T C T G C A
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CCACCAGGKGGCRCHA
CCCCCCCGGGGGNN---
 A C G T T A G C A G T C G C T A A T G C G A T C C G T A A C T G C T A G A C T G A C T G A C T G G T A C C T A G T A G C G A T C T G C A
T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G A C G T A C G T A C G T