Information for 7-GAGCCAATGG (Motif 10)

T C A G C T G A C T A G A T G C T G A C G C T A C G T A G C A T A C T G A T C G
Reverse Opposite:
A T G C T G A C C G T A G C A T C G A T A C T G T A C G A G T C G A C T A G T C
p-value:1e-13
log p-value:-3.026e+01
Information Content per bp:1.673
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif5.64%
Number of Background Sequences with motif744.5
Percentage of Background Sequences with motif1.56%
Average Position of motif in Targets49.3 +/- 24.9bp
Average Position of motif in Background51.7 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GAGCCAATGG-
-AGCCAATCGG
 T C A G C T G A C T A G A T G C T G A C G C T A C G T A G C A T A C T G A T C G A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

Sox6/MA0515.1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GAGCCAATGG
AAAACAATGG
 T C A G C T G A C T A G A T G C T G A C G C T A C G T A G C A T A C T G A T C G
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GAGCCAATGG
VRAACAATGG
 T C A G C T G A C T A G A T G C T G A C G C T A C G T A G C A T A C T G A T C G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAGCCAATGG
ACTAGCCAATCA
 A C G T A C G T T C A G C T G A C T A G A T G C T G A C G C T A C G T A G C A T A C T G A T C G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GAGCCAATGG-
-RAACAATGGN
 T C A G C T G A C T A G A T G C T G A C G C T A C G T A G C A T A C T G A T C G A C G T
A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

PB0168.1_Sox14_2/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAGCCAATGG---
CTCACACAATGGCGC
 A C G T A C G T T C A G C T G A C T A G A T G C T G A C G C T A C G T A G C A T A C T G A T C G A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GAGCCAATGG
--RACAAWGG
 T C A G C T G A C T A G A T G C T G A C G C T A C G T A G C A T A C T G A T C G
A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GAGCCAATGG
--AACAAAGG
 T C A G C T G A C T A G A T G C T G A C G C T A C G T A G C A T A C T G A T C G
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

SOX9/MA0077.1/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GAGCCAATGG
-GAACAATGG
 T C A G C T G A C T A G A T G C T G A C G C T A C G T A G C A T A C T G A T C G
A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G

NFYB/MA0502.1/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GAGCCAATGG-
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T T C A G C T G A C T A G A T G C T G A C G C T A C G T A G C A T A C T G A T C G A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G