Information for 7-AMCAAWAAAASAT (Motif 7)

C G T A G T A C A G T C C G T A C G T A C G T A C G T A C G T A C G T A G C T A A T G C C G T A A C G T
Reverse Opposite:
C G T A A C G T T A C G C A G T A C G T A C G T A C G T C G A T A C G T A C G T A C T G A C T G A C G T
p-value:1e-12
log p-value:-2.974e+01
Information Content per bp:1.892
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets27.3 +/- 21.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.1/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AMCAAWAAAASAT
-CCAATAAAAC--
 C G T A G T A C A G T C C G T A C G T A C G T A C G T A C G T A C G T A G C T A A T G C C G T A A C G T
A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:2
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--AMCAAWAAAASAT-
AACCCAATAAAATTCG
 A C G T A C G T C G T A G T A C A G T C C G T A C G T A C G T A C G T A C G T A C G T A G C T A A T G C C G T A A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

HOXA13/MA0650.1/Jaspar

Match Rank:3
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AMCAAWAAAASAT
-CCAATAAAAA--
 C G T A G T A C A G T C C G T A C G T A C G T A C G T A C G T A C G T A G C T A A T G C C G T A A C G T
A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AMCAAWAAAASAT-
CTACCAATAAAATTCT
 A C G T A C G T C G T A G T A C A G T C C G T A C G T A C G T A C G T A C G T A C G T A G C T A A T G C C G T A A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AMCAAWAAAASAT
-CCAATAAAAA--
 C G T A G T A C A G T C C G T A C G T A C G T A C G T A C G T A C G T A G C T A A T G C C G T A A C G T
A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:6
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:AMCAAWAAAASAT--
---AAACAAACATTC
 C G T A G T A C A G T C C G T A C G T A C G T A C G T A C G T A C G T A G C T A A T G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AMCAAWAAAASAT
NCYAATAAAA---
 C G T A G T A C A G T C C G T A C G T A C G T A C G T A C G T A C G T A G C T A A T G C C G T A A C G T
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:8
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AMCAAWAAAASAT
CCYMATAAAA---
 C G T A G T A C A G T C C G T A C G T A C G T A C G T A C G T A C G T A G C T A A T G C C G T A A C G T
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

PB0116.1_Elf3_2/Jaspar

Match Rank:9
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AMCAAWAAAASAT--
GTTCAAAAAAAAAATTC
 A C G T A C G T C G T A G T A C A G T C C G T A C G T A C G T A C G T A C G T A C G T A G C T A A T G C C G T A A C G T A C G T A C G T
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AMCAAWAAAASAT
AAGCCATAAAA---
 A C G T C G T A G T A C A G T C C G T A C G T A C G T A C G T A C G T A C G T A G C T A A T G C C G T A A C G T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T