Information for 4-GCGGCCAATC (Motif 7)

A C T G T A G C T A C G C A T G A G T C G A T C T C G A T G C A G C A T A T G C
Reverse Opposite:
T A C G C G T A A C G T A G C T C T A G T C A G G T A C A T G C A T C G T G A C
p-value:1e-12
log p-value:-2.865e+01
Information Content per bp:1.661
Number of Target Sequences with motif67.0
Percentage of Target Sequences with motif7.31%
Number of Background Sequences with motif1210.3
Percentage of Background Sequences with motif2.66%
Average Position of motif in Targets54.6 +/- 26.6bp
Average Position of motif in Background49.4 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.79
Offset:2
Orientation:forward strand
Alignment:GCGGCCAATC--
--AGCCAATCGG
 A C T G T A G C T A C G C A T G A G T C G A T C T C G A T G C A G C A T A T G C A C G T A C G T
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-GCGGCCAATC-
ACTAGCCAATCA
 A C G T A C T G T A G C T A C G C A T G A G T C G A T C T C G A T G C A G C A T A T G C A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---GCGGCCAATC--
AAATGGACCAATCAG
 A C G T A C G T A C G T A C T G T A G C T A C G C A T G A G T C G A T C T C G A T G C A G C A T A T G C A C G T A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:GCGGCCAATC
--TGCCAA--
 A C T G T A G C T A C G C A T G A G T C G A T C T C G A T G C A G C A T A T G C
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GCGGCCAATC
CGTGCCAAG-
 A C T G T A G C T A C G C A T G A G T C G A T C T C G A T G C A G C A T A T G C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

NFYA/MA0060.2/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GCGGCCAATC--------
TGGACCAATCAGCACTCT
 A C T G T A G C T A C G C A T G A G T C G A T C T C G A T G C A G C A T A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Dux/MA0611.1/Jaspar

Match Rank:7
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GCGGCCAATC--
----CCAATCAA
 A C T G T A G C T A C G C A T G A G T C G A T C T C G A T G C A G C A T A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCGGCCAATC--
SCTGTCAVTCAV
 A C T G T A G C T A C G C A T G A G T C G A T C T C G A T G C A G C A T A T G C A C G T A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

PB0112.1_E2F2_2/Jaspar

Match Rank:9
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GCGGCCAATC--
CCTTCGGCGCCAAAAGG
 A C G T A C G T A C G T A C G T A C G T A C T G T A G C T A C G C A T G A G T C G A T C T C G A T G C A G C A T A T G C A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCGGCCAATC--
NCTGTCAATCAN
 A C T G T A G C T A C G C A T G A G T C G A T C T C G A T G C A G C A T A T G C A C G T A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A