Information for 2-GTCGCCGTGGCAAVGC (Motif 4)

A C T G C G A T A T G C T A C G A G T C G T A C A C T G A G C T A C T G A C T G A T G C C G T A G T C A T A G C A C T G A G T C
Reverse Opposite:
A C T G A G T C A C T G A C G T A C G T A T C G A G T C A G T C T C G A A G T C A C T G A C T G A T G C A T C G C G T A A G T C
p-value:1e-13
log p-value:-3.036e+01
Information Content per bp:1.815
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.7 +/- 22.1bp
Average Position of motif in Background69.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GTCGCCGTGGCAAVGC
NGTTGCCATGGCAA---
 A C G T A C T G C G A T A T G C T A C G A G T C G T A C A C T G A G C T A C T G A C T G A T G C C G T A G T C A T A G C A C T G A G T C
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GTCGCCGTGGCAAVGC
GTTGCCATGGCAAC--
 A C T G C G A T A T G C T A C G A G T C G T A C A C T G A G C T A C T G A C T G A T G C C G T A G T C A T A G C A C T G A G T C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GTCGCCGTGGCAAVGC
KGTTGCCATGGCAAC--
 A C G T A C T G C G A T A T G C T A C G A G T C G T A C A C T G A G C T A C T G A C T G A T G C C G T A G T C A T A G C A C T G A G T C
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GTCGCCGTGGCAAVGC
CGGTTGCCATGGCAAC--
 A C G T A C G T A C T G C G A T A T G C T A C G A G T C G T A C A C T G A G C T A C T G A C T G A T G C C G T A G T C A T A G C A C T G A G T C
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GTCGCCGTGGCAAVGC
GGTTGCCATGGCAA---
 A C G T A C T G C G A T A T G C T A C G A G T C G T A C A C T G A G C T A C T G A C T G A T G C C G T A G T C A T A G C A C T G A G T C
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T A C G T

RFX5/MA0510.2/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTCGCCGTGGCAAVGC
NGTTGCCATGGCAACG-
 A C G T A C T G C G A T A T G C T A C G A G T C G T A C A C T G A G C T A C T G A C T G A T G C C G T A G T C A T A G C A C T G A G T C
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G A C G T

RFX2/MA0600.2/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GTCGCCGTGGCAAVGC
CGTTGCCATGGCAACG-
 A C G T A C T G C G A T A T G C T A C G A G T C G T A C A C T G A G C T A C T G A C T G A T G C C G T A G T C A T A G C A C T G A G T C
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G A C G T

RFX3/MA0798.1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GTCGCCGTGGCAAVGC
CGTTGCCATGGCAACG-
 A C G T A C T G C G A T A T G C T A C G A G T C G T A C A C T G A G C T A C T G A C T G A T G C C G T A G T C A T A G C A C T G A G T C
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G A C G T

RFX4/MA0799.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GTCGCCGTGGCAAVGC
CGTTGCCATGGCAACG-
 A C G T A C T G C G A T A T G C T A C G A G T C G T A C A C T G A G C T A C T G A C T G A T G C C G T A G T C A T A G C A C T G A G T C
A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G A C G T

CREB3L1/MA0839.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GTCGCCGTGGCAAVGC
TGATGACGTGGCAN---
 A C G T A C T G C G A T A T G C T A C G A G T C G T A C A C T G A G C T A C T G A C T G A T G C C G T A G T C A T A G C A C T G A G T C
G A C T C T A G T C G A G A C T A C T G G C T A A G T C A T C G A G C T C T A G C A T G G A T C C T G A A G C T A C G T A C G T A C G T