Information for 1-CMGCCWCCCGCGAGGC (Motif 4)

A T G C G T C A A C T G A T G C A G T C C G T A A T G C A G T C G T A C C A T G A G T C A C T G G T C A A T C G A C T G T A G C
Reverse Opposite:
A C T G A G T C A T G C A C G T T G A C A C T G G T A C C A T G T A C G A T C G G C A T C T A G A T C G G T A C A C G T T A C G
p-value:1e-14
log p-value:-3.417e+01
Information Content per bp:1.732
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.60%
Number of Background Sequences with motif29.8
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets52.8 +/- 24.5bp
Average Position of motif in Background56.4 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CMGCCWCCCGCGAGGC
-GGCCYCCTGCTGDGH
 A T G C G T C A A C T G A T G C A G T C C G T A A T G C A G T C G T A C C A T G A G T C A C T G G T C A A T C G A C T G T A G C
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

GLIS2/MA0736.1/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CMGCCWCCCGCGAGGC
-GACCCCCCGCGAAG-
 A T G C G T C A A C T G A T G C A G T C C G T A A T G C A G T C G T A C C A T G A G T C A C T G G T C A A T C G A C T G T A G C
A C G T A C T G T C G A A G T C G T A C G A T C G T A C G T A C G A T C C T A G A G T C C T A G C T G A G T C A A T C G A C G T

SP2/MA0516.1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CMGCCWCCCGCGAGGC
GCCCCGCCCCCTCCC----
 A C G T A C G T A C G T A T G C G T C A A C T G A T G C A G T C C G T A A T G C A G T C G T A C C A T G A G T C A C T G G T C A A T C G A C T G T A G C
A T C G A G T C G A T C A T G C A G T C C A T G A G T C A G T C A G T C G A T C G A T C A G C T A T G C A T G C A T G C A C G T A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CMGCCWCCCGCGAGGC
-GACCCCCCGCTGTGC
 A T G C G T C A A C T G A T G C A G T C C G T A A T G C A G T C G T A C C A T G A G T C A C T G G T C A A T C G A C T G T A G C
A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

ZIC3/MA0697.1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CMGCCWCCCGCGAGGC
-GACCCCCCGCTGCGC
 A T G C G T C A A C T G A T G C A G T C C G T A A T G C A G T C G T A C C A T G A G T C A C T G G T C A A T C G A C T G T A G C
A C G T A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

TFAP2A/MA0003.3/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CMGCCWCCCGCGAGGC
-CGCCTCAGGCA----
 A T G C G T C A A C T G A T G C A G T C C G T A A T G C A G T C G T A C C A T G A G T C A C T G G T C A A T C G A C T G T A G C
A C G T G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T A C G T A C G T A C G T

EGR1/MA0162.2/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CMGCCWCCCGCGAGGC
CCCCCGCCCCCGCC--
 A T G C G T C A A C T G A T G C A G T C C G T A A T G C A G T C G T A C C A T G A G T C A C T G G T C A A T C G A C T G T A G C
A T G C G A T C A G T C G T A C G A T C C T A G A G T C A G T C A G T C G T A C A G T C C A T G A T G C T G A C A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CMGCCWCCCGCGAGGC
GGTCCCGCCCCCTTCTC---
 A C G T A C G T A C G T A C G T A T G C G T C A A C T G A T G C A G T C C G T A A T G C A G T C G T A C C A T G A G T C A C T G G T C A A T C G A C T G T A G C
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T A C G T A C G T

PB0102.1_Zic2_1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CMGCCWCCCGCGAGGC
-ACCCCCCCGGGGGGN
 A T G C G T C A A C T G A T G C A G T C C G T A A T G C A G T C G T A C C A T G A G T C A C T G G T C A A T C G A C T G T A G C
A C G T T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G

PB0103.1_Zic3_1/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CMGCCWCCCGCGAGGC
-NCCCCCCCGGGGGGN
 A T G C G T C A A C T G A T G C A G T C C G T A A T G C A G T C G T A C C A T G A G T C A C T G G T C A A T C G A C T G T A G C
A C G T T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G