Information for 1-VTRNCACGTG (Motif 1)

T C G A C A G T C T A G G T A C G T A C C G T A A G T C C T A G A G C T C T A G
Reverse Opposite:
A G T C T C G A A G T C T C A G A C G T A C T G C A T G G A T C G T C A A C G T
p-value:1e-19
log p-value:-4.504e+01
Information Content per bp:1.597
Number of Target Sequences with motif142.0
Percentage of Target Sequences with motif16.19%
Number of Background Sequences with motif3250.1
Percentage of Background Sequences with motif7.03%
Average Position of motif in Targets51.4 +/- 24.8bp
Average Position of motif in Background49.4 +/- 35.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:1
Score:0.91
Offset:2
Orientation:forward strand
Alignment:VTRNCACGTG
--GNCACGTG
 T C G A C A G T C T A G G T A C G T A C C G T A A G T C C T A G A G C T C T A G
A C G T A C G T C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:2
Score:0.91
Offset:2
Orientation:forward strand
Alignment:VTRNCACGTG
--GHCACGTG
 T C G A C A G T C T A G G T A C G T A C C G T A A G T C C T A G A G C T C T A G
A C G T A C G T C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:3
Score:0.90
Offset:2
Orientation:forward strand
Alignment:VTRNCACGTG
--NVCACGTG
 T C G A C A G T C T A G G T A C G T A C C G T A A G T C C T A G A G C T C T A G
A C G T A C G T C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G

Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.90
Offset:2
Orientation:forward strand
Alignment:VTRNCACGTG----
--ACCACGTGGTNN
 T C G A C A G T C T A G G T A C G T A C C G T A A G T C C T A G A G C T C T A G A C G T A C G T A C G T A C G T
A C G T A C G T T C G A T G A C A G T C C G T A A G T C C T A G A C G T A C T G A C T G A G C T A G T C G C A T

MAX/MA0058.3/Jaspar

Match Rank:5
Score:0.89
Offset:2
Orientation:reverse strand
Alignment:VTRNCACGTG--
--NNCACGTGGT
 T C G A C A G T C T A G G T A C G T A C C G T A A G T C C T A G A G C T C T A G A C G T A C G T
A C G T A C G T C T G A T A C G T G A C C T G A A G T C T C A G G A C T A C T G A C T G A C G T

MNT/MA0825.1/Jaspar

Match Rank:6
Score:0.89
Offset:2
Orientation:reverse strand
Alignment:VTRNCACGTG--
--NGCACGTGNT
 T C G A C A G T C T A G G T A C G T A C C G T A A G T C C T A G A G C T C T A G A C G T A C G T
A C G T A C G T C T A G A C T G G T A C G T C A A G T C T C A G C G A T C A T G A T C G G A C T

TFE3/MA0831.1/Jaspar

Match Rank:7
Score:0.89
Offset:2
Orientation:reverse strand
Alignment:VTRNCACGTG--
--GTCACGTGNT
 T C G A C A G T C T A G G T A C G T A C C G T A A G T C C T A G A G C T C T A G A C G T A C G T
A C G T A C G T C T A G A C G T T G A C C G T A A G T C T C A G C G A T A T C G T C G A A G C T

Arnt/MA0004.1/Jaspar

Match Rank:8
Score:0.89
Offset:4
Orientation:forward strand
Alignment:VTRNCACGTG
----CACGTG
 T C G A C A G T C T A G G T A C G T A C C G T A A G T C C T A G A G C T C T A G
A C G T A C G T A C G T A C G T G T A C C T G A A G T C A C T G A C G T A C T G

Mitf/MA0620.1/Jaspar

Match Rank:9
Score:0.89
Offset:1
Orientation:forward strand
Alignment:VTRNCACGTG-
-GGTCACGTGG
 T C G A C A G T C T A G G T A C G T A C C G T A A G T C C T A G A G C T C T A G A C G T
A C G T C T A G T C A G A C G T T G A C G T C A A G T C T C A G G C A T A C T G T C A G

Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:10
Score:0.88
Offset:2
Orientation:forward strand
Alignment:VTRNCACGTG--
--GTCACGTGGT
 T C G A C A G T C T A G G T A C G T A C C G T A A G T C C T A G A G C T C T A G A C G T A C G T
A C G T A C G T T C A G A C G T A G T C T C G A A G T C T C A G G C A T C T A G C T A G A G C T