Information for 5-WGCGCAGCASGGKSAC (Motif 7)

C G A T C T A G A T G C A T C G G T A C C T G A A T C G A G T C T C G A A T C G A T C G T A C G A C G T A T G C G T C A A T G C
Reverse Opposite:
A T C G A C G T A T C G G T C A A T G C A T G C T A G C A G C T A C T G T A G C A G C T A C T G A T G C T A C G G A T C G C T A
p-value:1e-11
log p-value:-2.688e+01
Information Content per bp:1.706
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif11.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets53.6 +/- 22.0bp
Average Position of motif in Background52.0 +/- 14.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:WGCGCAGCASGGKSAC
-DCHCAGCAGGRGGCC
 C G A T C T A G A T G C A T C G G T A C C T G A A T C G A G T C T C G A A T C G A T C G T A C G A C G T A T G C G T C A A T G C
A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.70
Offset:2
Orientation:forward strand
Alignment:WGCGCAGCASGGKSAC
--CACAGCAGGGGG--
 C G A T C T A G A T G C A T C G G T A C C T G A A T C G A G T C T C G A A T C G A T C G T A C G A C G T A T G C G T C A A T G C
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-WGCGCAGCASGGKSAC
CCACACAGCAGGAGA--
 A C G T C G A T C T A G A T G C A T C G G T A C C T G A A T C G A G T C T C G A A T C G A T C G T A C G A C G T A T G C G T C A A T G C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:WGCGCAGCASGGKSAC
-NCGCAGCGGGGGGTC
 C G A T C T A G A T G C A T C G G T A C C T G A A T C G A G T C T C G A A T C G A T C G T A C G A C G T A T G C G T C A A T G C
A C G T C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-WGCGCAGCASGGKSAC
GAGCACAGCAGGACA--
 A C G T C G A T C T A G A T G C A T C G G T A C C T G A A T C G A G T C T C G A A T C G A T C G T A C G A C G T A T G C G T C A A T G C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:6
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:WGCGCAGCASGGKSAC
--CACAGCGGGGGGTC
 C G A T C T A G A T G C A T C G G T A C C T G A A T C G A G T C T C G A A T C G A T C G T A C G A C G T A T G C G T C A A T G C
A C G T A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:WGCGCAGCASGGKSAC
-DCTCAGCAGG-----
 C G A T C T A G A T G C A T C G G T A C C T G A A T C G A G T C T C G A A T C G A T C G T A C G A C G T A T G C G T C A A T G C
A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-WGCGCAGCASGGKSAC
CCACACAGCAGGAGA--
 A C G T C G A T C T A G A T G C A T C G G T A C C T G A A T C G A G T C T C G A A T C G A T C G T A C G A C G T A T G C G T C A A T G C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:WGCGCAGCASGGKSAC
-NCNCAGCGGGGGGTC
 C G A T C T A G A T G C A T C G G T A C C T G A A T C G A G T C T C G A A T C G A T C G T A C G A C G T A T G C G T C A A T G C
A C G T C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

SCRT2/MA0744.1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:WGCGCAGCASGGKSAC
-ATGCAACAGGTGG--
 C G A T C T A G A T G C A T C G G T A C C T G A A T C G A G T C T C G A A T C G A T C G T A C G A C G T A T G C G T C A A T G C
A C G T T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G A C G T A C G T