Information for 4-CCATTGGCAR (Motif 6)

A T G C A G T C C G T A C G A T C G A T A T C G C A T G A G T C C G T A C T G A
Reverse Opposite:
A G C T G C A T C T A G G T A C A T G C C G T A C G T A A C G T A C T G A T C G
p-value:1e-11
log p-value:-2.761e+01
Information Content per bp:1.729
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif3.81%
Number of Background Sequences with motif386.2
Percentage of Background Sequences with motif0.84%
Average Position of motif in Targets49.3 +/- 27.5bp
Average Position of motif in Background50.3 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----CCATTGGCAR--
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G A T C G A T A T C G C A T G A G T C C G T A C T G A A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Sox17/MA0078.1/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CCATTGGCAR
CTCATTGTC--
 A C G T A T G C A G T C C G T A C G A T C G A T A T C G C A T G A G T C C G T A C T G A
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CCATTGGCAR
CCATTGTTYB
 A T G C A G T C C G T A C G A T C G A T A T C G C A T G A G T C C G T A C T G A
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

NFY(CCAAT)/Promoter/Homer

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CCATTGGCAR
CCGATTGGCT-
 A C G T A T G C A G T C C G T A C G A T C G A T A T C G C A T G A G T C C G T A C T G A
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CCATTGGCAR
CCTTTGTT--
 A T G C A G T C C G T A C G A T C G A T A T C G C A T G A G T C C G T A C T G A
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CCATTGGCAR
CCWTTGTY--
 A T G C A G T C C G T A C G A T C G A T A T C G C A T G A G T C C G T A C T G A
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CCATTGGCAR
CCATTGTTC-
 A T G C A G T C C G T A C G A T C G A T A T C G C A T G A G T C C G T A C T G A
A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:8
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CCATTGGCAR
NCCATTGTTY-
 A C G T A T G C A G T C C G T A C G A T C G A T A T C G C A T G A G T C C G T A C T G A
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCATTGGCAR--
TGATTGGCTANN
 A T G C A G T C C G T A C G A T C G A T A T C G C A T G A G T C C G T A C T G A A C G T A C G T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCATTGGCAR
NCCATTGTTC-
 A C G T A T G C A G T C C G T A C G A T C G A T A T C G C A T G A G T C C G T A C T G A
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T