Information for 4-CKGCCACTCCCTGSCW (Motif 5)

T A G C A C G T A T C G A T G C G A T C C G T A A G T C A C G T T A G C G T A C G T A C C G A T A C T G A T G C A T G C C G T A
Reverse Opposite:
G C A T T A C G A T C G T G A C G C T A C A T G A C T G A T C G T G C A T C A G G C A T C T A G T A C G T A G C T G C A A T C G
p-value:1e-12
log p-value:-2.959e+01
Information Content per bp:1.594
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.02%
Number of Background Sequences with motif82.6
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets52.7 +/- 21.2bp
Average Position of motif in Background51.6 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CKGCCACTCCCTGSCW
NCTGTCAATCAN-----
 A C G T T A G C A C G T A T C G A T G C G A T C C G T A A G T C A C G T T A G C G T A C G T A C C G A T A C T G A T G C A T G C C G T A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CKGCCACTCCCTGSCW
SCTGTCAVTCAV-----
 A C G T T A G C A C G T A T C G A T G C G A T C C G T A A G T C A C G T T A G C G T A C G T A C C G A T A C T G A T G C A T G C C G T A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T A C G T A C G T

KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CKGCCACTCCCTGSCW
-GGCCACRCCCMK---
 T A G C A C G T A T C G A T G C G A T C C G T A A G T C A C G T T A G C G T A C G T A C C G A T A C T G A T G C A T G C C G T A
A C G T C T A G C T A G T G A C G T A C T G C A A G T C C T A G A G T C A G T C A G T C G T C A C A T G A C G T A C G T A C G T

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CKGCCACTCCCTGSCW
--GCCMCRCCCH----
 T A G C A C G T A T C G A T G C G A T C C G T A A G T C A C G T T A G C G T A C G T A C C G A T A C T G A T G C A T G C C G T A
A C G T A C G T C T A G G T A C G A T C G T C A G A T C C T G A A G T C A G T C A G T C G C A T A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CKGCCACTCCCTGSCW
GSCTGTCACTCA------
 A C G T A C G T T A G C A C G T A T C G A T G C G A T C C G T A A G T C A C G T T A G C G T A C G T A C C G A T A C T G A T G C A T G C C G T A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T A C G T A C G T A C G T

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CKGCCACTCCCTGSCW
-GGCCACACCCAN---
 T A G C A C G T A T C G A T G C G A T C C G T A A G T C A C G T T A G C G T A C G T A C C G A T A C T G A T G C A T G C C G T A
A C G T C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G A C G T A C G T A C G T

Klf1/MA0493.1/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CKGCCACTCCCTGSCW
-GGCCACACCCA----
 T A G C A C G T A T C G A T G C G A T C C G T A A G T C A C G T T A G C G T A C G T A C C G A T A C T G A T G C A T G C C G T A
A C G T C T A G T C A G T G A C G A T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T A C G T A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CKGCCACTCCCTGSCW
--GCCACACCCA----
 T A G C A C G T A T C G A T G C G A T C C G T A A G T C A C G T T A G C G T A C G T A C C G A T A C T G A T G C A T G C C G T A
A C G T A C G T C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T A C G T A C G T

Klf4/MA0039.2/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CKGCCACTCCCTGSCW
--GCCCCACCCA----
 T A G C A C G T A T C G A T G C G A T C C G T A A G T C A C G T T A G C G T A C G T A C C G A T A C T G A T G C A T G C C G T A
A C G T A C G T T C A G T G A C G A T C T G A C G T A C C T G A T A G C A G T C A G T C G C T A A C G T A C G T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CKGCCACTCCCTGSCW
NNGGCCACGCCTTTN--
 A C G T T A G C A C G T A T C G A T G C G A T C C G T A A G T C A C G T T A G C G T A C G T A C C G A T A C T G A T G C A T G C C G T A
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G A C G T A C G T