Information for 2-CCDGAACAAGGGCGGG (Motif 3)

A G T C A T G C C A G T C T A G C G T A C G T A A G T C G T C A C T G A C T A G C T A G A C T G G T A C A C T G A C T G A C T G
Reverse Opposite:
A G T C A G T C A G T C A C T G A G T C A G T C A G T C A G C T A C G T A C T G C G A T A C G T A G T C G C T A A T C G A C T G
p-value:1e-15
log p-value:-3.612e+01
Information Content per bp:1.826
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.4 +/- 13.6bp
Average Position of motif in Background40.9 +/- 17.7bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CCDGAACAAGGGCGGG
---GAACAATGGN---
 A G T C A T G C C A G T C T A G C G T A C G T A A G T C G T C A C T G A C T A G C T A G A C T G G T A C A C T G A C T G A C T G
A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CCDGAACAAGGGCGGG
--GGAACAAAGR----
 A G T C A T G C C A G T C T A G C G T A C G T A A G T C G T C A C T G A C T A G C T A G A C T G G T A C A C T G A C T G A C T G
A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CCDGAACAAGGGCGGG
----AACAAAGG----
 A G T C A T G C C A G T C T A G C G T A C G T A A G T C G T C A C T G A C T A G C T A G A C T G G T A C A C T G A C T G A C T G
A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCDGAACAAGGGCGGG
--AAAACAAAGG----
 A G T C A T G C C A G T C T A G C G T A C G T A A G T C G T C A C T G A C T A G C T A G A C T G G T A C A C T G A C T G A C T G
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

E2F6/MA0471.1/Jaspar

Match Rank:5
Score:0.58
Offset:9
Orientation:forward strand
Alignment:CCDGAACAAGGGCGGG----
---------GGGCGGGAAGG
 A G T C A T G C C A G T C T A G C G T A C G T A A G T C G T C A C T G A C T A G C T A G A C T G G T A C A C T G A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G

PB0061.1_Sox11_1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCDGAACAAGGGCGGG
ATAAGAACAAAGGACTA
 A C G T A G T C A T G C C A G T C T A G C G T A C G T A A G T C G T C A C T G A C T A G C T A G A C T G G T A C A C T G A C T G A C T G
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CCDGAACAAGGGCGGG
---RAACAATGGN---
 A G T C A T G C C A G T C T A G C G T A C G T A A G T C G T C A C T G A C T A G C T A G A C T G G T A C A C T G A C T G A C T G
A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCDGAACAAGGGCGGG
AGAAGAACAAAGGACTA
 A C G T A G T C A T G C C A G T C T A G C G T A C G T A A G T C G T C A C T G A C T A G C T A G A C T G G T A C A C T G A C T G A C T G
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

SOX9/MA0077.1/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CCDGAACAAGGGCGGG
---GAACAATGG----
 A G T C A T G C C A G T C T A G C G T A C G T A A G T C G T C A C T G A C T A G C T A G A C T G G T A C A C T G A C T G A C T G
A C G T A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T

PB0107.1_Ascl2_2/Jaspar

Match Rank:10
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CCDGAACAAGGGCGGG-----
-----NATNGGGNGGGGANAN
 A G T C A T G C C A G T C T A G C G T A C G T A A G T C G T C A C T G A C T A G C T A G A C T G G T A C A C T G A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A T G C A G A C T T C G A C T A G C T A G T C A G G A T C A C T G C A T G A T C G C A T G G C T A A C G T C T G A T A C G