Information for 4-TGCCYCWCASTKGMSA (Motif 8)

A C G T A C T G A G T C A G T C A G C T A G T C G C T A A G T C C G T A A T G C A C G T A C T G A C T G G T C A A T C G C G T A
Reverse Opposite:
A C G T T A G C A C G T A G T C G T A C C G T A A T C G C G A T A C T G C G A T A C T G C T G A A C T G C T A G A G T C C G T A
p-value:1e-10
log p-value:-2.502e+01
Information Content per bp:1.845
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.4 +/- 10.5bp
Average Position of motif in Background42.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----TGCCYCWCASTKGMSA
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G C T A G T C G C T A A G T C C G T A A T G C A C G T A C T G A C T G G T C A A T C G C G T A
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TGCCYCWCASTKGMSA
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G C T A G T C G C T A A G T C C G T A A T G C A C G T A C T G A C T G G T C A A T C G C G T A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--TGCCYCWCASTKGMSA
SCTGTCAVTCAV------
 A C G T A C G T A C G T A C T G A G T C A G T C A G C T A G T C G C T A A G T C C G T A A T G C A C G T A C T G A C T G G T C A A T C G C G T A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TGCCYCWCASTKGMSA
CTGTCTGTCACCT----
 A C G T A C G T A C T G A G T C A G T C A G C T A G T C G C T A A G T C C G T A A T G C A C G T A C T G A C T G G T C A A T C G C G T A
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TGCCYCWCASTKGMSA
TGTCTGDCACCT----
 A C G T A C T G A G T C A G T C A G C T A G T C G C T A A G T C C G T A A T G C A C G T A C T G A C T G G T C A A T C G C G T A
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------TGCCYCWCASTKGMSA
CNNBRGCGCCCCCTGSTGGC--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G C T A G T C G C T A A G T C C G T A A T G C A C G T A C T G A C T G G T C A A T C G C G T A
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--TGCCYCWCASTKGMSA
NCTGTCAATCAN------
 A C G T A C G T A C G T A C T G A G T C A G T C A G C T A G T C G C T A A G T C C G T A A T G C A C G T A C T G A C T G G T C A A T C G C G T A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

KLF5/MA0599.1/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:forward strand
Alignment:TGCCYCWCASTKGMSA
-GCCCCGCCCC-----
 A C G T A C T G A G T C A G T C A G C T A G T C G C T A A G T C C G T A A T G C A C G T A C T G A C T G G T C A A T C G C G T A
A C G T A C T G A G T C A G T C G T A C A G T C C T A G A G T C A G T C A G T C G A T C A C G T A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-TGCCYCWCASTKGMSA
ATGCCCACC--------
 A C G T A C G T A C T G A G T C A G T C A G C T A G T C G C T A A G T C C G T A A T G C A C G T A C T G A C T G G T C A A T C G C G T A
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:TGCCYCWCASTKGMSA
-GCCMCRCCCH-----
 A C G T A C T G A G T C A G T C A G C T A G T C G C T A A G T C C G T A A T G C A C G T A C T G A C T G G T C A A T C G C G T A
A C G T C T A G G T A C G A T C G T C A G A T C C T G A A G T C A G T C A G T C G C A T A C G T A C G T A C G T A C G T A C G T