Information for 3-CATATTTCAA (Motif 3)

A G T C C G T A G C A T C T G A C G A T A C G T G C A T G T A C T G C A G T C A
Reverse Opposite:
C A G T A C G T C A T G C G T A T G C A C G T A G A C T C G T A C G A T T C A G
p-value:1e-13
log p-value:-3.063e+01
Information Content per bp:1.684
Number of Target Sequences with motif63.0
Percentage of Target Sequences with motif7.19%
Number of Background Sequences with motif1147.8
Percentage of Background Sequences with motif2.41%
Average Position of motif in Targets46.5 +/- 28.8bp
Average Position of motif in Background50.6 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CATATTTCAA--
CTAATATTGCTAAA
 A C G T A C G T A G T C C G T A G C A T C T G A C G A T A C G T G C A T G T A C T G C A G T C A A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CATATTTCAA--
CTAATATTGCTAAA
 A C G T A C G T A G T C C G T A G C A T C T G A C G A T A C G T G C A T G T A C T G C A G T C A A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CATATTTCAA
ATGCATAATTCA-
 A C G T A C G T A C G T A G T C C G T A G C A T C T G A C G A T A C G T G C A T G T A C T G C A G T C A
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:4
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CATATTTCAA
GKVTCADRTTWC--
 A C G T A C G T A C G T A C G T A G T C C G T A G C A T C T G A C G A T A C G T G C A T G T A C T G C A G T C A
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:5
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CATATTTCAA--
---ATTTGAATT
 A G T C C G T A G C A T C T G A C G A T A C G T G C A T G T A C T G C A G T C A A C G T A C G T
A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:6
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CATATTTCAA----
----TTTGAAACCG
 A G T C C G T A G C A T C T G A C G A T A C G T G C A T G T A C T G C A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CATATTTCAA
NATGTTGCAA
 A G T C C G T A G C A T C T G A C G A T A C G T G C A T G T A C T G C A G T C A
C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A

NEUROG2/MA0669.1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CATATTTCAA
AACATATGTC--
 A C G T A C G T A G T C C G T A G C A T C T G A C G A T A C G T G C A T G T A C T G C A G T C A
T C G A T G C A G A T C C T G A A C G T T G C A G C A T A C T G A G C T A G T C A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CATATTTCAA--
--ATTTTCCATT
 A G T C C G T A G C A T C T G A C G A T A C G T G C A T G T A C T G C A G T C A A C G T A C G T
A C G T A C G T C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CATATTTCAA--
--ATTTTCCATT
 A G T C C G T A G C A T C T G A C G A T A C G T G C A T G T A C T G C A G T C A A C G T A C G T
A C G T A C G T C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T