Information for 3-KGGCTKTTTSRCWCCM (Motif 2)

A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A T G C C T A G A G T C C G A T A G T C A G T C G T A C
Reverse Opposite:
A C T G A C T G A C T G C G T A A C T G A G T C T A C G C G T A C G T A G T C A G T C A C G T A A C T G A G T C A G T C G T A C
p-value:1e-15
log p-value:-3.653e+01
Information Content per bp:1.846
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.7 +/- 19.0bp
Average Position of motif in Background62.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0013.1_Eomes_1/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:KGGCTKTTTSRCWCCM----
---NNTTTTCACACCTTNNN
 A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A T G C C T A G A G T C C G A T A G T C A G T C G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

TBX2/MA0688.1/Jaspar

Match Rank:2
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:KGGCTKTTTSRCWCCM-
------TTTCACACCTN
 A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A T G C C T A G A G T C C G A T A G T C A G T C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T G C A T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T G C A T

TBR1/MA0802.1/Jaspar

Match Rank:3
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:KGGCTKTTTSRCWCCM
------TTTCACACCT
 A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A T G C C T A G A G T C C G A T A G T C A G T C G T A C
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T

EOMES/MA0800.1/Jaspar

Match Rank:4
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:KGGCTKTTTSRCWCCM-
----NTTTTCACACCTT
 A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A T G C C T A G A G T C C G A T A G T C A G T C G T A C A C G T
A C G T A C G T A C G T A C G T C T G A G C A T C A G T C G A T A G C T T G A C C T G A A G T C T C G A T G A C G A T C G A C T G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.57
Offset:3
Orientation:forward strand
Alignment:KGGCTKTTTSRCWCCM
---CTGTCTGTCACCT
 A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A T G C C T A G A G T C C G A T A G T C A G T C G T A C
A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

TBX21/MA0690.1/Jaspar

Match Rank:6
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:KGGCTKTTTSRCWCCM-
-------TTCACACCTT
 A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A T G C C T A G A G T C C G A T A G T C A G T C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T T G A C C T G A G T A C T C G A T G A C G A T C G A C T G A C T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:7
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:KGGCTKTTTSRCWCCM-
-------TTMACACCTT
 A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A T G C C T A G A G T C C G A T A G T C A G T C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:8
Score:0.53
Offset:6
Orientation:forward strand
Alignment:KGGCTKTTTSRCWCCM
------ATTAACACCT
 A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A T G C C T A G A G T C C G A T A G T C A G T C G T A C
A C G T A C G T A C G T A C G T A C G T A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T

E2F(E2F)/Hela-CellCycle-Expression/Homer

Match Rank:9
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:KGGCTKTTTSRCWCCM-
-----TTTTCGCGCGAA
 A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A T G C C T A G A G T C C G A T A G T C A G T C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T A G C T A G C T A G C T A T G C A T C G A G T C A C T G A T G C A T C G T C G A T C G A

TBX20/MA0689.1/Jaspar

Match Rank:10
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:KGGCTKTTTSRCWCCM-
------CTTCACACCTA
 A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A T G C C T A G A G T C C G A T A G T C A G T C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G C A T G C A T G T A C G T C A T G A C G T C A G T A C A G T C G A C T G C T A