Information for 9-CAGCTCCAAGGACAGK (Motif 11)

A T G C C G T A A C T G A G T C A C G T A G T C A G T C C G T A C T G A A C T G A C T G G C T A G T A C C T G A T A C G C A G T
Reverse Opposite:
G T C A A T G C A G C T A C T G C A G T A G T C A G T C A G C T G A C T C T A G T A C G T G C A C T A G T A G C A C G T A T C G
p-value:1e-9
log p-value:-2.179e+01
Information Content per bp:1.748
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.2 +/- 23.0bp
Average Position of motif in Background45.3 +/- 34.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CAGCTCCAAGGACAGK---
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A T G C C G T A A C T G A G T C A C G T A G T C A G T C C G T A C T G A A C T G A C T G G C T A G T A C C T G A T A C G C A G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:2
Score:0.68
Offset:4
Orientation:forward strand
Alignment:CAGCTCCAAGGACAGK
----NTCAAGGTCA--
 A T G C C G T A A C T G A G T C A C G T A G T C A G T C C G T A C T G A A C T G A C T G G C T A G T A C C T G A T A C G C A G T
A C G T A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.67
Offset:6
Orientation:forward strand
Alignment:CAGCTCCAAGGACAGK
------CAAGGHCANV
 A T G C C G T A A C T G A G T C A C G T A G T C A G T C C G T A C T G A A C T G A C T G G C T A G T A C C T G A T A C G C A G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CAGCTCCAAGGACAGK---
TCAGCACCATGGACAGCTCC
 A C G T A T G C C G T A A C T G A G T C A C G T A G T C A G T C C G T A C T G A A C T G A C T G G C T A G T A C C T G A T A C G C A G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.67
Offset:4
Orientation:forward strand
Alignment:CAGCTCCAAGGACAGK
----BTCAAGGTCA--
 A T G C C G T A A C T G A G T C A C G T A G T C A G T C C G T A C T G A A C T G A C T G G C T A G T A C C T G A T A C G C A G T
A C G T A C G T A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CAGCTCCAAGGACAGK
-AAGTTCAAGGTCAGC
 A T G C C G T A A C T G A G T C A C G T A G T C A G T C C G T A C T G A A C T G A C T G G C T A G T A C C T G A T A C G C A G T
A C G T T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.62
Offset:5
Orientation:forward strand
Alignment:CAGCTCCAAGGACAGK
-----CCAGGAACAG-
 A T G C C G T A A C T G A G T C A C G T A G T C A G T C C G T A C T G A A C T G A C T G G C T A G T A C C T G A T A C G C A G T
A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:CAGCTCCAAGGACAGK
-----TCAAGGTCAN-
 A T G C C G T A A C T G A G T C A C G T A G T C A G T C C G T A C T G A A C T G A C T G G C T A G T A C C T G A T A C G C A G T
A C G T A C G T A C G T A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CAGCTCCAAGGACAGK
-----CAAAGGTCAG-
 A T G C C G T A A C T G A G T C A C G T A G T C A G T C C G T A C T G A A C T G A C T G G C T A G T A C C T G A T A C G C A G T
A C G T A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CAGCTCCAAGGACAGK---
--TATTCAAGGTCATGCGA
 A T G C C G T A A C T G A G T C A C G T A G T C A G T C C G T A C T G A A C T G A C T G G C T A G T A C C T G A T A C G C A G T A C G T A C G T A C G T
A C G T A C G T C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A