Information for 9-GBTAATRGGC (Motif 42)

A C T G A T C G A C G T C G T A C G T A A C G T C T G A A C T G A C T G T A G C
Reverse Opposite:
A T C G G T A C A G T C A G C T C G T A A C G T A C G T C G T A T A G C A G T C
p-value:1e-6
log p-value:-1.602e+01
Information Content per bp:1.828
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif16.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets35.3 +/- 19.0bp
Average Position of motif in Background47.2 +/- 19.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BSX/MA0876.1/Jaspar

Match Rank:1
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:GBTAATRGGC
-NTAATTGG-
 A C T G A T C G A C G T C G T A C G T A A C G T C T G A A C T G A C T G T A G C
A C G T A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:2
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GBTAATRGGC
GKTAATGR--
 A C T G A T C G A C G T C G T A C G T A A C G T C T G A A C T G A C T G T A G C
A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:3
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:GBTAATRGGC
-NTAATTGN-
 A C T G A T C G A C G T C G T A C G T A A C G T C T G A A C T G A C T G T A G C
A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:GBTAATRGGC
GTTAATGGCC
 A C T G A T C G A C G T C G T A C G T A A C G T C T G A A C T G A C T G T A G C
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

Barhl1/MA0877.1/Jaspar

Match Rank:5
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GBTAATRGGC
GCTAATTGCT
 A C T G A T C G A C G T C G T A C G T A A C G T C T G A A C T G A C T G T A G C
A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T

EN2/MA0642.1/Jaspar

Match Rank:6
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GBTAATRGGC
GNTAATTGGN
 A C T G A T C G A C G T C G T A C G T A A C G T C T G A A C T G A C T G T A G C
T A C G A T G C A G C T T C G A C G T A A C G T A C G T T C A G T A C G A T C G

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GBTAATRGGC
-CTAATKGV-
 A C T G A T C G A C G T C G T A C G T A A C G T C T G A A C T G A C T G T A G C
A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T

HOXA2/MA0900.1/Jaspar

Match Rank:8
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GBTAATRGGC
GNTAATTANN
 A C T G A T C G A C G T C G T A C G T A A C G T C T G A A C T G A C T G T A G C
A T C G A T C G C G A T C T G A G T C A A G C T A C G T C T G A A T C G A T C G

MSX2/MA0708.1/Jaspar

Match Rank:9
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GBTAATRGGC
-NTAATTGG-
 A C T G A T C G A C G T C G T A C G T A A C G T C T G A A C T G A C T G T A G C
A C G T A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G A C G T

ESX1/MA0644.1/Jaspar

Match Rank:10
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GBTAATRGGC
GNTAATTGGN
 A C T G A T C G A C G T C G T A C G T A A C G T C T G A A C T G A C T G T A G C
C A T G A G C T C G A T C T G A C T G A C A G T A G C T C T A G C T A G A G C T