Information for 3-STCACGGTAC (Motif 27)

A T G C C G A T A T G C C G T A G T A C A T C G A C T G A G C T G T C A A G T C
Reverse Opposite:
T A C G A C G T C T G A A G T C A T G C A C T G A C G T A T C G G C T A A T C G
p-value:1e-9
log p-value:-2.104e+01
Information Content per bp:1.751
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif21.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets54.1 +/- 18.8bp
Average Position of motif in Background49.3 +/- 36.1bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax2/MA0067.1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-STCACGGTAC
AGTCACGC---
 A C G T A T G C C G A T A T G C C G T A G T A C A T C G A C T G A G C T G T C A A G T C
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:STCACGGTAC----
GTCACGCTCNCTGA
 A T G C C G A T A T G C C G T A G T A C A T C G A C T G A G C T G T C A A G T C A C G T A C G T A C G T A C G T
A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

MTF1/MA0863.1/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----STCACGGTAC
TTTGCACACGGCAC
 A C G T A C G T A C G T A C G T A T G C C G A T A T G C C G T A G T A C A T C G A C T G A G C T G T C A A G T C
C A G T A C G T G A C T T C A G G T A C C G T A T A G C G T C A A G T C C A T G C A T G A G T C T G C A G A T C

PB0045.1_Myb_1/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---STCACGGTAC----
NNNNTAACGGTTNNNAN
 A C G T A C G T A C G T A T G C C G A T A T G C C G T A G T A C A T C G A C T G A G C T G T C A A G T C A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G T A G A C T C T G A C G T A A G T C A T C G C A T G G A C T G A C T C A G T G T A C G T A C G C T A C G A T

PB0140.1_Irf6_2/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----STCACGGTAC-
ACCACTCTCGGTCAC
 A C G T A C G T A C G T A C G T A T G C C G A T A T G C C G T A G T A C A T C G A C T G A G C T G T C A A G T C A C G T
T G C A A G T C A G T C G C T A G T A C C A G T A T G C A G C T A G T C C T A G T C A G C A G T G A T C C T G A T A G C

PB0046.1_Mybl1_1/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---STCACGGTAC----
NNANTAACGGTTNNNAN
 A C G T A C G T A C G T A T G C C G A T A T G C C G T A G T A C A T C G A C T G A G C T G T C A A G T C A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G A T G A C T C T G A T C G A A G T C A T C G C A T G G A C T G A C T C G A T G A C T G A T C G C T A C T G A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:STCACGGTAC
BTCAAGGTCA
 A T G C C G A T A T G C C G T A G T A C A T C G A C T G A G C T G T C A A G T C
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:STCACGGTAC
NTCAAGGTCA
 A T G C C G A T A T G C C G T A G T A C A T C G A C T G A G C T G T C A A G T C
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

BHLHE41/MA0636.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:STCACGGTAC
GTCACGTGAC
 A T G C C G A T A T G C C G T A G T A C A T C G A C T G A G C T G T C A A G T C
T C A G C A G T A G T C C G T A A G T C C T A G A G C T A T C G G T C A A G T C

ESRRB/MA0141.3/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:STCACGGTAC--
-TCAAGGTCATA
 A T G C C G A T A T G C C G T A G T A C A T C G A C T G A G C T G T C A A G T C A C G T A C G T
A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A