Information for 12-TGKCTCCCWGCTK (Motif 26)

A G C T A C T G A C T G A G T C A C G T A G T C A G T C G T A C C G A T A C T G A G T C A G C T A C G T
Reverse Opposite:
G T C A C T G A A C T G T G A C C G T A A C T G C T A G C T A G C G T A C T A G G T A C A G T C C T G A
p-value:1e-9
log p-value:-2.105e+01
Information Content per bp:1.758
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.87%
Number of Background Sequences with motif204.0
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets51.4 +/- 24.6bp
Average Position of motif in Background52.4 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGKCTCCCWGCTK
CTGTCTGTCACCT-
 A C G T A G C T A C T G A C T G A G T C A C G T A G T C A G T C G T A C C G A T A C T G A G T C A G C T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TGKCTCCCWGCTK---
-GGCCYCCTGCTGDGH
 A G C T A C T G A C T G A G T C A C G T A G T C A G T C G T A C C G A T A C T G A G T C A G C T A C G T A C G T A C G T A C G T
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TGKCTCCCWGCTK--
---CCCCCTGCTGTG
 A G C T A C T G A C T G A G T C A C G T A G T C A G T C G T A C C G A T A C T G A G T C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGKCTCCCWGCTK
TGTCTGDCACCT-
 A G C T A C T G A C T G A G T C A C G T A G T C A G T C G T A C C G A T A C T G A G T C A G C T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGKCTCCCWGCTK
CTGGCAGNCTGCCA
 A C G T A G C T A C T G A C T G A G T C A C G T A G T C A G T C G T A C C G A T A C T G A G T C A G C T A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer

Match Rank:6
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------TGKCTCCCWGCTK-
NVCAKCTGGNNNCCAGMTGB
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G A C T G A G T C A C G T A G T C A G T C G T A C C G A T A C T G A G T C A G C T A C G T A C G T
T A C G T G A C T G A C C G T A A C T G T A G C C G A T A C T G A T C G A G C T A T G C T C G A T A G C G T A C C G T A A C T G T G A C G C A T A C T G A C T G

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:7
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:TGKCTCCCWGCTK---
------CCAGCTGTTN
 A G C T A C T G A C T G A G T C A C G T A G T C A G T C G T A C C G A T A C T G A G T C A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:8
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:TGKCTCCCWGCTK---
------HCAGCTGDTN
 A G C T A C T G A C T G A G T C A C G T A G T C A G T C G T A C C G A T A C T G A G T C A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T

ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.54
Offset:-9
Orientation:forward strand
Alignment:---------TGKCTCCCWGCTK---
MACCTTCYATGGCTCCCTAKTGCCY
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G A C T G A G T C A C G T A G T C A G T C G T A C C G A T A C T G A G T C A G C T A C G T A C G T A C G T A C G T
T G C A T G C A A G T C A G T C G A C T C A G T A T G C G A T C C T G A A C G T C T A G C T A G A G T C A C G T A G T C A G T C A G T C G A C T C G T A A C G T A G C T C T A G G A T C G A T C G A T C

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TGKCTCCCWGCTK-----
---TCNCCTGCTGNGNNN
 A G C T A C T G A C T G A G T C A C G T A G T C A G T C G T A C C G A T A C T G A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G