Information for 1-GCTCATCWGCACAMTC (Motif 1)

T A C G A G T C A G C T A T G C C G T A A C G T A G T C G C A T A C T G G T A C G T C A T G A C C G T A G T A C C A G T A G T C
Reverse Opposite:
A C T G G T C A A C T G C G A T A C T G A C G T A C T G A G T C C G T A C T A G C G T A C G A T A T C G C T G A A C T G A G T C
p-value:1e-16
log p-value:-3.876e+01
Information Content per bp:1.742
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.7 +/- 9.2bp
Average Position of motif in Background51.2 +/- 0.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GCTCATCWGCACAMTC
-CTCATTTGCATW---
 T A C G A G T C A G C T A T G C C G T A A C G T A G T C G C A T A C T G G T A C G T C A T G A C C G T A G T A C C A G T A G T C
A C G T A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T A C G T A C G T

POU1F1/MA0784.1/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GCTCATCWGCACAMTC
-CTAATTTGCATATT-
 T A C G A G T C A G C T A T G C C G T A A C G T A G T C G C A T A C T G G T A C G T C A T G A C C G T A G T A C C A G T A G T C
A C G T G A T C G C A T T G C A G C T A C A G T G C A T C G A T T C A G G T A C C T G A G A C T G C T A G C A T G C A T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCTCATCWGCACAMTC
TNTAATTTGCATACNA
 T A C G A G T C A G C T A T G C C G T A A C G T A G T C G C A T A C T G G T A C G T C A T G A C C G T A G T A C C A G T A G T C
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCTCATCWGCACAMTC
TNTAATTTGCATACNA
 T A C G A G T C A G C T A T G C C G T A A C G T A G T C G C A T A C T G G T A C G T C A T G A C C G T A G T A C C A G T A G T C
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0144.1_Pou2f2/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCTCATCWGCACAMTC
TNTAATTTGCATANNN
 T A C G A G T C A G C T A T G C C G T A A C G T A G T C G C A T A C T G G T A C G T C A T G A C C G T A G T A C C A G T A G T C
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

POU3F2/MA0787.1/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GCTCATCWGCACAMTC
--TAATTTGCATAA--
 T A C G A G T C A G C T A T G C C G T A A C G T A G T C G C A T A C T G G T A C G T C A T G A C C G T A G T A C C A G T A G T C
A C G T A C G T C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A A C G T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GCTCATCWGCACAMTC
----ATTTGCATA---
 T A C G A G T C A G C T A T G C C G T A A C G T A G T C G C A T A C T G G T A C G T C A T G A C C G T A G T A C C A G T A G T C
A C G T A C G T A C G T A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A A C G T A C G T A C G T

NRF(NRF)/Promoter/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCTCATCWGCACAMTC
GCGCATGCGCAC----
 T A C G A G T C A G C T A T G C C G T A A C G T A G T C G C A T A C T G G T A C G T C A T G A C C G T A G T A C C A G T A G T C
A C T G A G T C A C T G A G T C C G T A A C G T A C T G A G T C A C T G A G T C C T G A T A G C A C G T A C G T A C G T A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GCTCATCWGCACAMTC
---AATTTGCATANT-
 T A C G A G T C A G C T A T G C C G T A A C G T A G T C G C A T A C T G G T A C G T C A T G A C C G T A G T A C C A G T A G T C
A C G T A C G T A C G T G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GCTCATCWGCACAMTC
----ATTTGCATAA--
 T A C G A G T C A G C T A T G C C G T A A C G T A G T C G C A T A C T G G T A C G T C A T G A C C G T A G T A C C A G T A G T C
A C G T A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T