Information for 11-CTCTTGGGTGCCG (Motif 28)

A G T C A C G T A G T C C G A T A C G T A C T G A C T G C T A G A C G T A C T G A G T C A G T C A T C G
Reverse Opposite:
A T G C A C T G A C T G A G T C C G T A A G T C A G T C G T A C C G T A C G T A A C T G C G T A A C T G
p-value:1e-8
log p-value:-2.003e+01
Information Content per bp:1.934
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.5 +/- 27.7bp
Average Position of motif in Background50.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Znf423/MA0116.1/Jaspar

Match Rank:1
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CTCTTGGGTGCCG
GCACCCCTGGGTGCC-
 A C G T A C G T A C G T A G T C A C G T A G T C C G A T A C G T A C T G A C T G C T A G A C G T A C T G A G T C A G T C A T C G
A C T G T G A C G T C A G T A C A G T C A G T C G A T C C G A T C T A G A C T G A C T G A C G T A C T G A T G C A G T C A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTCTTGGGTGCCG--
NNNNTTGTGTGCTTNN
 A C G T A G T C A C G T A G T C C G A T A C G T A C T G A C T G C T A G A C G T A C T G A G T C A G T C A T C G A C G T A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

PB0158.1_Rfx3_2/Jaspar

Match Rank:3
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CTCTTGGGTGCCG-----
ACTGACCCTTGGTTACCACAAAG
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C C G A T A C G T A C T G A C T G C T A G A C G T A C T G A G T C A G T C A T C G A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

PB0130.1_Gm397_2/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTCTTGGGTGCCG--
NNGCGTGTGTGCNGCN
 A C G T A G T C A C G T A G T C C G A T A C G T A C T G A C T G C T A G A C G T A C T G A G T C A G T C A T C G A C G T A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTCTTGGGTGCCG
--CTTGAGTGGCT
 A G T C A C G T A G T C C G A T A C G T A C T G A C T G C T A G A C G T A C T G A G T C A G T C A T C G
A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:6
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CTCTTGGGTGCCG
---TTGCGTGCVA
 A G T C A C G T A G T C C G A T A C G T A C T G A C T G C T A G A C G T A C T G A G T C A G T C A T C G
A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CTCTTGGGTGCCG-
----TGGGTGTGGC
 A G T C A C G T A G T C C G A T A C G T A C T G A C T G C T A G A C G T A C T G A G T C A G T C A T C G A C G T
A C G T A C G T A C G T A C G T C G A T A C T G A C T G A C T G A G C T A C T G A C G T C T A G C A T G G A T C

PAX1/MA0779.1/Jaspar

Match Rank:8
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----CTCTTGGGTGCCG
NGCANTCATGCGTGACG
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C C G A T A C G T A C T G A C T G C T A G A C G T A C T G A G T C A G T C A T C G
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G

PB0159.1_Rfx4_2/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CTCTTGGGTGCCG-
TACCCTAGTTACCGA
 A C G T A G T C A C G T A G T C C G A T A C G T A C T G A C T G C T A G A C G T A C T G A G T C A G T C A T C G A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

PAX9/MA0781.1/Jaspar

Match Rank:10
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----CTCTTGGGTGCCG
TGCAGTCATGCGTGACG
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C C G A T A C G T A C T G A C T G C T A G A C G T A C T G A G T C A G T C A T C G
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G