Information for 4-GCCACAGAGACAA (Motif 10)

A C T G A G T C A G T C C G T A G T A C C G T A A C T G C T G A A C T G G T C A A T G C C G T A C G T A
Reverse Opposite:
A C G T C G A T A T C G A C G T A G T C A G C T A G T C C G A T A C T G C G A T A C T G A C T G A G T C
p-value:1e-10
log p-value:-2.526e+01
Information Content per bp:1.863
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif11.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets45.9 +/- 20.7bp
Average Position of motif in Background57.9 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCCACAGAGACAA
AGCCAATCGG----
 A C G T A C T G A G T C A G T C C G T A G T A C C G T A A C T G C T G A A C T G G T C A A T G C C G T A C G T A
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCCACAGAGACAA
TGGCACCATGCCAA
 A C G T A C T G A G T C A G T C C G T A G T A C C G T A A C T G C T G A A C T G G T C A A T G C C G T A C G T A
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:3
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCCACAGAGACAA
GTAGGTCACTGGGTCA-
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A G T A C C G T A A C T G C T G A A C T G G T C A A T G C C G T A C G T A
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCCACAGAGACAA
TGCCAA--------
 A C G T A C T G A G T C A G T C C G T A G T A C C G T A A C T G C T G A A C T G G T C A A T G C C G T A C G T A
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GCCACAGAGACAA
CGTGCCAAG-------
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A G T A C C G T A A C T G C T G A A C T G G T C A A T G C C G T A C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCCACAGAGACAA
AAACCACAGAN----
 A C G T A C G T A C T G A G T C A G T C C G T A G T A C C G T A A C T G C T G A A C T G G T C A A T G C C G T A C G T A
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GCCACAGAGACAA
ACTAGCCAATCA-----
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A G T A C C G T A A C T G C T G A A C T G G T C A A T G C C G T A C G T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:8
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------GCCACAGAGACAA
AAATGGACCAATCAG----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A G T A C C G T A A C T G C T G A A C T G G T C A A T G C C G T A C G T A
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GCCACAGAGACAA-
TTGGCANNNTGCCAAG
 A C G T A C G T A C T G A G T C A G T C C G T A G T A C C G T A A C T G C T G A A C T G G T C A A T G C C G T A C G T A A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GCCACAGAGACAA
NWAACCACADNN----
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A G T A C C G T A A C T G C T G A A C T G G T C A A T G C C G T A C G T A
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T