Information for 9-CCGGACGCAATTA (Motif 8)

T G A C T A G C C T A G A T C G T G C A T A G C C A T G T A G C G C T A C T G A A G C T A C G T T C G A
Reverse Opposite:
A G C T G T C A C T G A G A C T C A G T A T C G G A T C A C T G A C G T T A G C G A T C A T C G A C T G
p-value:1e-13
log p-value:-3.158e+01
Information Content per bp:1.648
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif14.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets40.5 +/- 27.7bp
Average Position of motif in Background55.9 +/- 22.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Msx3/MA0709.1/Jaspar

Match Rank:1
Score:0.71
Offset:6
Orientation:forward strand
Alignment:CCGGACGCAATTA-
------CCAATTAA
 T G A C T A G C C T A G A T C G T G C A T A G C C A T G T A G C G C T A C T G A A G C T A C G T T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A

MSX2/MA0708.1/Jaspar

Match Rank:2
Score:0.70
Offset:6
Orientation:forward strand
Alignment:CCGGACGCAATTA-
------CCAATTAA
 T G A C T A G C C T A G A T C G T G C A T A G C C A T G T A G C G C T A C T G A A G C T A C G T T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A

Dlx2/MA0885.1/Jaspar

Match Rank:3
Score:0.70
Offset:6
Orientation:forward strand
Alignment:CCGGACGCAATTA-
------GCAATTAA
 T G A C T A G C C T A G A T C G T G C A T A G C C A T G T A G C G C T A C T G A A G C T A C G T T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G G A T C G T C A G T C A A C G T A C G T C G T A G C T A

MSX1/MA0666.1/Jaspar

Match Rank:4
Score:0.70
Offset:6
Orientation:forward strand
Alignment:CCGGACGCAATTA-
------CCAATTAG
 T G A C T A G C C T A G A T C G T G C A T A G C C A T G T A G C G C T A C T G A A G C T A C G T T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G

Dlx4/MA0881.1/Jaspar

Match Rank:5
Score:0.69
Offset:6
Orientation:forward strand
Alignment:CCGGACGCAATTA-
------CCAATTAC
 T G A C T A G C C T A G A T C G T G C A T A G C C A T G T A G C G C T A C T G A A G C T A C G T T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G T C A G C A T A G C T G C T A G T A C

ISL2/MA0914.1/Jaspar

Match Rank:6
Score:0.69
Offset:6
Orientation:forward strand
Alignment:CCGGACGCAATTA-
------GCACTTAA
 T G A C T A G C C T A G A T C G T G C A T A G C C A T G T A G C G C T A C T G A A G C T A C G T T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A

Dlx3/MA0880.1/Jaspar

Match Rank:7
Score:0.69
Offset:6
Orientation:forward strand
Alignment:CCGGACGCAATTA-
------CCAATTAC
 T G A C T A G C C T A G A T C G T G C A T A G C C A T G T A G C G C T A C T G A A G C T A C G T T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G T C A G C A T A G C T G C T A G T A C

BARX1/MA0875.1/Jaspar

Match Rank:8
Score:0.69
Offset:6
Orientation:forward strand
Alignment:CCGGACGCAATTA-
------GCAATTAG
 T G A C T A G C C T A G A T C G T G C A T A G C C A T G T A G C G C T A C T G A A G C T A C G T T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G

Barhl1/MA0877.1/Jaspar

Match Rank:9
Score:0.69
Offset:5
Orientation:reverse strand
Alignment:CCGGACGCAATTA--
-----NNCAATTANN
 T G A C T A G C C T A G A T C G T G C A T A G C C A T G T A G C G C T A C T G A A G C T A C G T T C G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.68
Offset:6
Orientation:reverse strand
Alignment:CCGGACGCAATTA-
------BCMATTAG
 T G A C T A G C C T A G A T C G T G C A T A G C C A T G T A G C G C T A C T G A A G C T A C G T T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G