Information for 20-CGATAGACTG (Motif 29)

G A T C C T A G C G T A A C G T C G T A A T C G C G T A A G T C C G A T A C T G
Reverse Opposite:
A G T C C G T A C T A G G A C T A T G C C G A T G T C A A C G T A G T C C T A G
p-value:1e-5
log p-value:-1.195e+01
Information Content per bp:1.761
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif61.4
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets39.2 +/- 22.1bp
Average Position of motif in Background52.0 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CGATAGACTG-
NTGATTGACAGN
 A C G T G A T C C T A G C G T A A C G T C G T A A T C G C G T A A G T C C G A T A C T G A C G T
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

DMRT3/MA0610.1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CGATAGACTG
NTTGATACATT-
 A C G T A C G T G A T C C T A G C G T A A C G T C G T A A T C G C G T A A G T C C G A T A C T G
C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CGATAGACTG--
TGAGTGACAGSC
 G A T C C T A G C G T A A C G T C G T A A T C G C G T A A G T C C G A T A C T G A C G T A C G T
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CGATAGACTG-
BTGABTGACAGS
 A C G T G A T C C T A G C G T A A C G T C G T A A T C G C G T A A G T C C G A T A C T G A C G T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CGATAGACTG-
ATGATKGATGRC
 A C G T G A T C C T A G C G T A A C G T C G T A A T C G C G T A A G T C C G A T A C T G A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CGATAGACTG
TGATTGATGA
 G A T C C T A G C G T A A C G T C G T A A T C G C G T A A G T C C G A T A C T G
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

GATA5/MA0766.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CGATAGACTG
AGATAAGA--
 G A T C C T A G C G T A A C G T C G T A A T C G C G T A A G T C C G A T A C T G
G C T A A C T G C T G A A C G T G C T A C T G A T A C G T C G A A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CGATAGACTG-
TGATTTATGGC
 G A T C C T A G C G T A A C G T C G T A A T C G C G T A A G T C C G A T A C T G A C G T
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

PBX1/MA0070.1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CGATAGACTG
TTTGATTGATGN
 A C G T A C G T G A T C C T A G C G T A A C G T C G T A A T C G C G T A A G T C C G A T A C T G
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CGATAGACTG
AGGTGNCAGACAG
 A C G T A C G T A C G T G A T C C T A G C G T A A C G T C G T A A T C G C G T A A G T C C G A T A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G