Information for 3-GARGTCTYYKCCC (Motif 4)

A C T G G T C A C T G A A C T G A C G T A G T C A C G T A G T C A G C T A C T G A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G G T A C C T G A C T A G C G T A A C T G C G T A A G T C G A C T A C G T A G T C
p-value:1e-10
log p-value:-2.392e+01
Information Content per bp:1.874
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.6 +/- 13.1bp
Average Position of motif in Background65.8 +/- 14.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GARGTCTYYKCCC
GARTGGTCATCGCCC
 A C G T A C G T A C T G G T C A C T G A A C T G A C G T A G T C A C G T A G T C A G C T A C T G A G T C A G T C A G T C
T A C G C G T A T C A G G A C T C T A G A C T G C A G T T A G C T C G A A C G T G T A C C T A G A G T C A G T C G A T C

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GARGTCTYYKCCC
AGGGAAGTCATTTCT-
 A C G T A C G T A C G T A C T G G T C A C T G A A C T G A C G T A G T C A C G T A G T C A G C T A C T G A G T C A G T C A G T C
C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GARGTCTYYKCCC-
NAGGTCANTGACCT
 A C T G G T C A C T G A A C T G A C G T A G T C A C G T A G T C A G C T A C T G A G T C A G T C A G T C A C G T
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:4
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GARGTCTYYKCCC---
----GCTCCGCCCMCY
 A C T G G T C A C T G A A C T G A C G T A G T C A C G T A G T C A G C T A C T G A G T C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.56
Offset:7
Orientation:forward strand
Alignment:GARGTCTYYKCCC---
-------CTGCCCGCA
 A C T G G T C A C T G A A C T G A C G T A G T C A C G T A G T C A G C T A C T G A G T C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GARGTCTYYKCCC
---TKCTGTTCCA
 A C T G G T C A C T G A A C T G A C G T A G T C A C G T A G T C A G C T A C T G A G T C A G T C A G T C
A C G T A C G T A C G T A C G T C A G T T A G C A G C T T A C G C G A T A C G T A G T C G T A C G T C A

PB0143.1_Klf7_2/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GARGTCTYYKCCC-----
-AAGCATACGCCCAACTT
 A C T G G T C A C T G A A C T G A C G T A G T C A C G T A G T C A G C T A C T G A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T T G C A T C G A C T A G A G T C C G T A C G A T G T C A A G T C C T A G T A G C T A G C G A T C G T C A C G T A G T A C G C A T C A G T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:8
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GARGTCTYYKCCC
-AGGTCTCTAACC
 A C T G G T C A C T G A A C T G A C G T A G T C A C G T A G T C A G C T A C T G A G T C A G T C A G T C
A C G T C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C

PB0117.1_Eomes_2/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GARGTCTYYKCCC
GCGGAGGTGTCGCCTC
 A C G T A C G T A C G T A C T G G T C A C T G A A C T G A C G T A G T C A C G T A G T C A G C T A C T G A G T C A G T C A G T C
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

KLF5/MA0599.1/Jaspar

Match Rank:10
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GARGTCTYYKCCC-
----GCCCCGCCCC
 A C T G G T C A C T G A A C T G A C G T A G T C A C G T A G T C A G C T A C T G A G T C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C T G A G T C A G T C G T A C A G T C C T A G A G T C A G T C A G T C G A T C