Information for 3-CAKCAKCTCYCTGCCW (Motif 4)

A G T C C G T A A C T G A T G C G T C A A C G T A G T C A C G T A G T C A G T C A G T C A C G T A T C G A G T C A G T C C G T A
Reverse Opposite:
C G A T A C T G A C T G A T G C C G T A A C T G T C A G A C T G C G T A A C T G T G C A A C G T A T C G G T A C A C G T A C T G
p-value:1e-11
log p-value:-2.690e+01
Information Content per bp:1.880
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.5 +/- 20.4bp
Average Position of motif in Background38.1 +/- 7.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Myog/MA0500.1/Jaspar

Match Rank:1
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CAKCAKCTCYCTGCCW
NNGCAGCTGTC-----
 A G T C C G T A A C T G A T G C G T C A A C G T A G T C A C G T A G T C A G T C A G T C A C G T A T C G A G T C A G T C C G T A
A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C A C G T A C G T A C G T A C G T A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:2
Score:0.50
Offset:1
Orientation:forward strand
Alignment:CAKCAKCTCYCTGCCW
-AGCAGCTGCT-----
 A G T C C G T A A C T G A T G C G T C A A C G T A G T C A C G T A G T C A G T C A G T C A C G T A T C G A G T C A G T C C G T A
A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T A C G T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:CAKCAKCTCYCTGCCW
CAGCTGTTTCCT----
 A G T C C G T A A C T G A T G C G T C A A C G T A G T C A C G T A G T C A G T C A G T C A C G T A T C G A G T C A G T C C G T A
G T A C C G T A C A T G T A G C A G C T A C T G A G C T G C A T A C G T A G T C A G T C A G C T A C G T A C G T A C G T A C G T

Tcf12/MA0521.1/Jaspar

Match Rank:4
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:CAKCAKCTCYCTGCCW
NNGCAGCTGTT-----
 A G T C C G T A A C T G A T G C G T C A A C G T A G T C A C G T A G T C A G T C A G T C A C G T A T C G A G T C A G T C C G T A
A T G C G C A T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T A C G T A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:5
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CAKCAKCTCYCTGCCW
NNAGCAGCTGCT-----
 A C G T A G T C C G T A A C T G A T G C G T C A A C G T A G T C A C G T A G T C A G T C A G T C A C G T A T C G A G T C A G T C C G T A
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:6
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----CAKCAKCTCYCTGCCW
NNGGCGACACCTCNNN----
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T G C G T C A A C G T A G T C A C G T A G T C A G T C A G T C A C G T A T C G A G T C A G T C C G T A
A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.50
Offset:10
Orientation:forward strand
Alignment:CAKCAKCTCYCTGCCW--
----------TTGCCAAG
 A G T C C G T A A C T G A T G C G T C A A C G T A G T C A C G T A G T C A G T C A G T C A C G T A T C G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:CAKCAKCTCYCTGCCW
CAGCAGCTGN------
 A G T C C G T A A C T G A T G C G T C A A C G T A G T C A C G T A G T C A G T C A G T C A C G T A T C G A G T C A G T C C G T A
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:9
Score:0.48
Offset:-7
Orientation:forward strand
Alignment:-------CAKCAKCTCYCTGCCW
ADGGYAGYAGCATCT--------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T G C G T C A A C G T A G T C A C G T A G T C A G T C A G T C A C G T A T C G A G T C A G T C C G T A
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.48
Offset:10
Orientation:forward strand
Alignment:CAKCAKCTCYCTGCCW---
----------CTGCCCGCA
 A G T C C G T A A C T G A T G C G T C A A C G T A G T C A C G T A G T C A G T C A G T C A C G T A T C G A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A