Information for 11-RTGAWCCRTGGCY (Motif 15)

T C G A A C G T A T C G C G T A C G T A A G T C A G T C C T G A A C G T C T A G A C T G A G T C A G T C
Reverse Opposite:
C T A G A C T G A G T C A G T C C G T A A G C T A C T G A C T G G C A T C G A T A T G C G T C A A G C T
p-value:1e-8
log p-value:-2.037e+01
Information Content per bp:1.829
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif19.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets49.9 +/- 23.0bp
Average Position of motif in Background30.9 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RHOXF1/MA0719.1/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:RTGAWCCRTGGCY
ATAATCCC-----
 T C G A A C G T A T C G C G T A C G T A A G T C A G T C C T G A A C G T C T A G A C T G A G T C A G T C
G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:RTGAWCCRTGGCY
-TGATTTATGGCC
 T C G A A C G T A T C G C G T A C G T A A G T C A G T C C T G A A C G T C T A G A C T G A G T C A G T C
A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:RTGAWCCRTGGCY
-TGATTRATGGCY
 T C G A A C G T A T C G C G T A C G T A A G T C A G T C C T G A A C G T C T A G A C T G A G T C A G T C
A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

SOX9/MA0077.1/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:RTGAWCCRTGGCY
--GAACAATGG--
 T C G A A C G T A T C G C G T A C G T A A G T C A G T C C T G A A C G T C T A G A C T G A G T C A G T C
A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T

PAX1/MA0779.1/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----RTGAWCCRTGGCY
NGCANTCATGCGTGACG
 A C G T A C G T A C G T A C G T T C G A A C G T A T C G C G T A C G T A A G T C A G T C C T G A A C G T C T A G A C T G A G T C A G T C
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G

PB0118.1_Esrra_2/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----RTGAWCCRTGGCY
NNNNTTGACCCCTNNNN
 A C G T A C G T A C G T A C G T T C G A A C G T A T C G C G T A C G T A A G T C A G T C C T G A A C G T C T A G A C T G A G T C A G T C
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:RTGAWCCRTGGCY
-TGATTTATGGC-
 T C G A A C G T A T C G C G T A C G T A A G T C A G T C C T G A A C G T C T A G A C T G A G T C A G T C
A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:RTGAWCCRTGGCY----
-TGGACTTTGNNCTNTG
 T C G A A C G T A T C G C G T A C G T A A G T C A G T C C T G A A C G T C T A G A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:RTGAWCCRTGGCY
--GAACAATGGN-
 T C G A A C G T A T C G C G T A C G T A A G T C A G T C C T G A A C G T C T A G A C T G A G T C A G T C
A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T

NFE2/MA0841.1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-RTGAWCCRTGGCY
GATGAGTCATN---
 A C G T T C G A A C G T A T C G C G T A C G T A A G T C A G T C C T G A A C G T C T A G A C T G A G T C A G T C
T A C G T C G A A C G T C T A G T C G A A T C G C A G T G T A C C T G A A G C T A C T G A C G T A C G T A C G T