Information for 3-SSRTWKAKGARTA (Motif 5)

A T G C T A C G C T A G A C G T C G A T A C T G G T C A C A T G A C T G C G T A T C G A A G C T G C T A
Reverse Opposite:
C A G T C T G A A G C T A C G T A G T C G T A C A C G T T G A C G C A T C G T A A G T C A T G C A T C G
p-value:1e-8
log p-value:-1.848e+01
Information Content per bp:1.759
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif7.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets33.2 +/- 19.7bp
Average Position of motif in Background53.5 +/- 22.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.65
Offset:6
Orientation:forward strand
Alignment:SSRTWKAKGARTA---
------ATGAATATTC
 A T G C T A C G C T A G A C G T C G A T A C T G G T C A C A T G A C T G C G T A T C G A A G C T G C T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.61
Offset:6
Orientation:forward strand
Alignment:SSRTWKAKGARTA---
------ATGMATATDC
 A T G C T A C G C T A G A C G T C G A T A C T G G T C A C A T G A C T G C G T A T C G A A G C T G C T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:SSRTWKAKGARTA-
NNTNTCATGAATGT
 A T G C T A C G C T A G A C G T C G A T A C T G G T C A C A T G A C T G C G T A T C G A A G C T G C T A A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

PB0129.1_Glis2_2/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:SSRTWKAKGARTA--
-TCTTTANTAATANN
 A T G C T A C G C T A G A C G T C G A T A C T G G T C A C A T G A C T G C G T A T C G A A G C T G C T A A C G T A C G T
A C G T A G C T A G T C C A G T G C A T C G A T C G T A C G A T G A C T G T C A C G T A G A C T T G C A G C A T C G A T

PB0170.1_Sox17_2/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:SSRTWKAKGARTA-----
-NTTNTATGAATGTGNNC
 A T G C T A C G C T A G A C G T C G A T A C T G G T C A C A T G A C T G C G T A T C G A A G C T G C T A A C G T A C G T A C G T A C G T A C G T
A C G T G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PB0203.1_Zfp691_2/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:SSRTWKAKGARTA-----
-NTNNNAGGAGTCTCNTN
 A T G C T A C G C T A G A C G T C G A T A C T G G T C A C A T G A C T G C G T A T C G A A G C T G C T A A C G T A C G T A C G T A C G T A C G T
A C G T A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

OTX2/MA0712.1/Jaspar

Match Rank:7
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:SSRTWKAKGARTA-
------NGGATTAA
 A T G C T A C G C T A G A C G T C G A T A C T G G T C A C A T G A C T G C G T A T C G A A G C T G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A

PB0198.1_Zfp128_2/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:SSRTWKAKGARTA--
-NNTATANATATACN
 A T G C T A C G C T A G A C G T C G A T A C T G G T C A C A T G A C T G C G T A T C G A A G C T G C T A A C G T A C G T
A C G T A T C G A C T G G C A T C T G A G C A T C T G A G C A T C T G A G A C T C G T A G A C T C G T A G T A C G T C A

HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:SSRTWKAKGARTA-
--GTTAATNATTAA
 A T G C T A C G C T A G A C G T C G A T A C T G G T C A C A T G A C T G C G T A T C G A A G C T G C T A A C G T
A C G T A C G T C T A G A C G T G C A T T C G A G T C A G C A T A T C G C G T A C A G T A G C T C T G A T G C A

PH0015.1_Crx/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:SSRTWKAKGARTA----
-CGTTGGGGATTAGCCT
 A T G C T A C G C T A G A C G T C G A T A C T G G T C A C A T G A C T G C G T A T C G A A G C T G C T A A C G T A C G T A C G T A C G T
A C G T A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T