Information for 6-KGCCYGWCTRGTT (Motif 18)

A C T G C T A G A G T C A G T C A G C T A C T G C G A T A G T C A C G T C T A G A C T G A C G T A C G T
Reverse Opposite:
C G T A C G T A A G T C A G C T C G T A A C T G C G A T A G T C C T G A A C T G A C T G A G T C G T A C
p-value:1e-8
log p-value:-1.933e+01
Information Content per bp:1.872
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.8 +/- 23.6bp
Average Position of motif in Background72.8 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:KGCCYGWCTRGTT
---CTGTCTGG--
 A C T G C T A G A G T C A G T C A G C T A C T G C G A T A G T C A C G T C T A G A C T G A C G T A C G T
A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:KGCCYGWCTRGTT
-VBSYGTCTGG--
 A C T G C T A G A G T C A G T C A G C T A C T G C G A T A G T C A C G T C T A G A C T G A C G T A C G T
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-KGCCYGWCTRGTT---
NNTNNTGTCTGGNNTNG
 A C G T A C T G C T A G A G T C A G T C A G C T A C T G C G A T A G T C A C G T C T A G A C T G A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

PH0040.1_Hmbox1/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:KGCCYGWCTRGTT------
--GAAAACTAGTTAACATC
 A C T G C T A G A G T C A G T C A G C T A C T G C G A T A G T C A C G T C T A G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

HMBOX1/MA0895.1/Jaspar

Match Rank:5
Score:0.58
Offset:6
Orientation:forward strand
Alignment:KGCCYGWCTRGTT---
------ACTAGTTAAC
 A C T G C T A G A G T C A G T C A G C T A C T G C G A T A G T C A C G T C T A G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer

Match Rank:6
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------KGCCYGWCTRGTT-
VAAACYKGTHWAACMRGTTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T A G A G T C A G T C A G C T A C T G C G A T A G T C A C G T C T A G A C T G A C G T A C G T A C G T
T C G A C T G A C T G A C G T A T A G C G A C T C A T G T C A G G C A T G C A T C G T A C T G A C T G A A G T C G T A C C T A G A T C G G A C T G A C T A G C T

PB0151.1_Myf6_2/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:KGCCYGWCTRGTT--
GGNGCGNCTGTTNNN
 A C T G C T A G A G T C A G T C A G C T A C T G C G A T A G T C A C G T C T A G A C T G A C G T A C G T A C G T A C G T
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:KGCCYGWCTRGTT
---TWGTCTGV--
 A C T G C T A G A G T C A G T C A G C T A C T G C G A T A G T C A C G T C T A G A C T G A C G T A C G T
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----KGCCYGWCTRGTT
GTCATGCHTGRCTGS--
 A C G T A C G T A C G T A C G T A C T G C T A G A G T C A G T C A G C T A C T G C G A T A G T C A C G T C T A G A C T G A C G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--KGCCYGWCTRGTT
GGGGCTYGKCTGGGA
 A C G T A C G T A C T G C T A G A G T C A G T C A G C T A C T G C G A T A G T C A C G T C T A G A C T G A C G T A C G T
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A