Information for 13-RTCAGTYATY (Motif 50)

T C G A A C G T G T A C G T C A A C T G A C G T A G T C G T C A C A G T A G C T
Reverse Opposite:
T C G A G T C A C A G T T C A G T G C A T G A C C A G T A C T G T G C A A G C T
p-value:1e-4
log p-value:-1.068e+01
Information Content per bp:1.615
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.76%
Number of Background Sequences with motif220.4
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets42.8 +/- 24.6bp
Average Position of motif in Background56.1 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

JDP2/MA0655.1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:RTCAGTYATY
ATGAGTCAT-
 T C G A A C G T G T A C G T C A A C T G A C G T A G T C G T C A C A G T A G C T
C T G A C G A T C A T G G C T A A T C G G C A T T G A C C T G A A G C T A C G T

NFE2/MA0841.1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-RTCAGTYATY
GATGAGTCATN
 A C G T T C G A A C G T G T A C G T C A A C T G A C G T A G T C G T C A C A G T A G C T
T A C G T C G A A C G T C T A G T C G A A T C G C A G T G T A C C T G A A G C T A C T G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---RTCAGTYATY
SCTGTCAVTCAV-
 A C G T A C G T A C G T T C G A A C G T G T A C G T C A A C T G A C G T A G T C G T C A C A G T A G C T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---RTCAGTYATY
NCTGTCAATCAN-
 A C G T A C G T A C G T T C G A A C G T G T A C G T C A A C T G A C G T A G T C G T C A C A G T A G C T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-RTCAGTYATY-
GATGAGTCATCC
 A C G T T C G A A C G T G T A C G T C A A C T G A C G T A G T C G T C A C A G T A G C T A C G T
C T A G T C G A G A C T A C T G C G T A A T C G C G A T T G A C C G T A A G C T G A T C G T A C

BATF::JUN/MA0462.1/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:RTCAGTYATY--
-TGAGTCATTTC
 T C G A A C G T G T A C G T C A A C T G A C G T A G T C G T C A C A G T A G C T A C G T A C G T
A C G T C G A T A C T G C G T A A T C G A C G T G T A C C G T A C A G T G C A T G A C T G A T C

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-RTCAGTYATY
BRRCVGTTDN-
 A C G T T C G A A C G T G T A C G T C A A C T G A C G T A G T C G T C A C A G T A G C T
A G C T C T A G C T A G A G T C T G C A A C T G A C G T C G A T C G T A T C A G A C G T

PB0144.1_Lef1_2/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----RTCAGTYATY--
GAAGATCAATCACTTA
 A C G T A C G T A C G T A C G T T C G A A C G T G T A C G T C A A C T G A C G T A G T C G T C A C A G T A G C T A C G T A C G T
T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--RTCAGTYATY
NNATGASTCATH
 A C G T A C G T T C G A A C G T G T A C G T C A A C T G A C G T A G T C G T C A C A G T A G C T
A C T G C T A G T C G A C G A T C A T G G C T A A T C G C G A T G T A C G C T A A G C T G T A C

JUN(var.2)/MA0489.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:RTCAGTYATY----
ATGAGTCATNTNNT
 T C G A A C G T G T A C G T C A A C T G A C G T A G T C G T C A C A G T A G C T A C G T A C G T A C G T A C G T
T G C A A C G T A C T G C G T A T A C G C G A T A G T C C G T A A G C T G A T C G A C T G A T C G A T C G A C T